Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1261 ATGATGGAATTGGATCCTATGGATTTGCTTCGTTCAAATCTCTCTCGAGTTCGAATCCCTGAACCCACCAATCGCATCTACAAGCAAGAATGCTGCATATCTTTCGAAACTCCTAGATCAGAAGGTGGATTGTTCATAGACATGTTCAATTTCCTTGCTTTTGGGAAGGAATGTGTTTCTTGGAATTTTGAGAAGACTGGTAATCCTGTTTATTTGCATATAAAGCAGACTAAGAAGATAGTTCCAGAAGACAGGCCTTCAAAGAAACCCACTCTTTTGGCTATAGGTGTTGATGGGGGATTTGATAACAATGACACTGAATATGAAGAAACTCGTAGTATAGTTATTTTGCCTGACTATGTATCTCTTCCATTCCCTTCAGTGGAATTGCCAGAGAAGGTACGGTTGGCTGCTGATGGCATCTTACTAGCTGAGGGTGCTGAACGGAAAGAGCAAGTTGCAGCTTGGACTGCTGCAGATACGAAACAAGTCAGTGCCTATGCGGTGAATTTGCAACAGATTGGCGATGGTGTTTTTATTCCTCCGTCTGGGTGGAAATGTTCTCAGTGTGACAAAACGGACAATCTCTGGCTAAATCTGACTGATGGAGTGATTCTTTGTGGGAGGAAAAACTGGGATGGAAGTGGTGGAAACAATCATGCCATTGAACACTACAAAAAGACAGGCTACCCTCTTGCTGTAAAGCTCGGGACTATCACTGCTGATATTGAATCAGCAGATGTTTACTCCTATCCAGAGGATGATAGCGTCTTGGACCCACTGTTAGCACAACATTTGGCATTTTTTGGCATCGACTTCTCATCACTTCAAAAGACTGAATTAACGACGGCTGAAAGAGAACTTGATCAAAATACCAATTTTGATTGGAATCGAATTCAAGAAAGTGGACAGGAAGTGGAACCAATTTTTGGACCTGGATATACAGGATTGGTCAATCTTGGAAACAGTTGTTATTTGGCAGCAACTATGCAAGTTGTGTTTTCAACACAATCCTTCTCTTCAAGGTACTATATAAGCCAAAATTTAAAGAAAGCATTTGAGGCGGCTCCCGCTGATCCAACTGTGGACCTGAATATGCAGTTGACAAAACTGGCTCATGGTCTACTGTCTGGTAAATATTCTATTCCAGCATCTGAGAATGATGAAAATGCAAACGTTGCTTCTTCAACCAAGACTGATAATCAGGAAGGGATACCCCCACGTATGTTTAAAGCTGTAATTGCTGCTAGTCATCCTGAATTTTCATCTATGCGGCAACAGGATGCTTTAGAATTTTTCCTTCATTTTATCGACCAAGTTGAACGAACTCATAGTGGGAAAGCTGAACCGGATCCTTCAAGGAGTTTCAAGTTTGGTATAGAAGATCGAATCATGTGTTCATCTGGAAAAGTTGCATATAATAGAAGGAATGATTACATTCTTTCCCTTAATATCCCATTGCATGAAGCAACTAACAAAGAAGAATTAGAATCCTTTCACAAACTGAAAGCTGAGAAACTTTCTGAAGGAAAGGAACTGTCCAGCGATGAGGTTGTACGTCCAAGGGTGCCTTTAGAAGCTTGCCTTGCAAACTTCTCAGCTCCCGAGGAGATACATGATTTCTACAGCACCGCCTTGAAAACAAAGACAACAGCTTTGAAGACTGCTGGTCTGACATCATTCCCTGATTATCTGGTGTTACACATGAGGAAATTTGTCATGGAGGCAGGATGGGTACCCAAAAAGCTTGATGTGTATATAGATGTTCCTGATATTATAGATATTAGTCATATGCGTAGCAAAGGTCACCAACCGGGGGAAGAGCTGTTGCCAGATGCAGTACCCGAGGAGGATTCAAAACCTTGGGTCAATGAAGAAATTGTCTCACAGCTGGTTTCCATGGGCTTTAACCATATTCATTGTCAGAAAGCTGTAATAAATACCTCAAATGCTGGTGTAGAAGAGGCCATGAATTGGTTGCTATCTCACATGGACGATCCAGATATTGATGCTCCTATTTCAAAAGGGCAAGGCTCTCAGAGTGTTGACCAATCAAAAGTTGATACTCTAATTTCATTTGGATTTCAAGAAGATGTTGCTCGAAAGGCACTGGAGGCTTCGAATGGTGACATTGAGAAAGCAACAGATTGGATATTCAGCAATCCTGATGCATCAGTTTCTAGTATGGATGCTACCTCATCAAACACTACATCTGTTCCAAATGGTGCTGACTTACCCGATGGGGGAGGAAAATACCGACTTATTGGAATCGTTAGCCACATTGGAACCTCAACACAGTGTGGTCACTATGTTGCTCACATCCTAAAAGATGGTAGATGGGTTATTTTTAATGACAACAAGGTTGGAGCATCCATTAATCCTCCAAAGGACATGGGATATCTTTATTTCTTCGAGAGGCTTAGTGATTAA 2430 0.4148 MMELDPMDLLRSNLSRVRIPEPTNRIYKQECCISFETPRSEGGLFIDMFNFLAFGKECVSWNFEKTGNPVYLHIKQTKKIVPEDRPSKKPTLLAIGVDGGFDNNDTEYEETRSIVILPDYVSLPFPSVELPEKVRLAADGILLAEGAERKEQVAAWTAADTKQVSAYAVNLQQIGDGVFIPPSGWKCSQCDKTDNLWLNLTDGVILCGRKNWDGSGGNNHAIEHYKKTGYPLAVKLGTITADIESADVYSYPEDDSVLDPLLAQHLAFFGIDFSSLQKTELTTAERELDQNTNFDWNRIQESGQEVEPIFGPGYTGLVNLGNSCYLAATMQVVFSTQSFSSRYYISQNLKKAFEAAPADPTVDLNMQLTKLAHGLLSGKYSIPASENDENANVASSTKTDNQEGIPPRMFKAVIAASHPEFSSMRQQDALEFFLHFIDQVERTHSGKAEPDPSRSFKFGIEDRIMCSSGKVAYNRRNDYILSLNIPLHEATNKEELESFHKLKAEKLSEGKELSSDEVVRPRVPLEACLANFSAPEEIHDFYSTALKTKTTALKTAGLTSFPDYLVLHMRKFVMEAGWVPKKLDVYIDVPDIIDISHMRSKGHQPGEELLPDAVPEEDSKPWVNEEIVSQLVSMGFNHIHCQKAVINTSNAGVEEAMNWLLSHMDDPDIDAPISKGQGSQSVDQSKVDTLISFGFQEDVARKALEASNGDIEKATDWIFSNPDASVSSMDATSSNTTSVPNGADLPDGGGKYRLIGIVSHIGTSTQCGHYVAHILKDGRWVIFNDNKVGASINPPKDMGYLYFFERLSD* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1261 809 SUPERFAMILY UBA-like 675 723 IPR009060 GO:0005515
Lan20g1261 809 SUPERFAMILY Cysteine proteinases 311 807 IPR038765 -
Lan20g1261 809 ProSiteProfiles Zinc finger UBP-type profile. 163 273 IPR001607 GO:0008270
Lan20g1261 809 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 115 IPR013083 -
Lan20g1261 809 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 752 770 IPR018200 GO:0004843|GO:0006511
Lan20g1261 809 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 808 - -
Lan20g1261 809 Pfam Variant UBP zinc finger 17 79 IPR041432 -
Lan20g1261 809 Pfam Zn-finger in ubiquitin-hydrolases and other protein 187 260 IPR001607 GO:0008270
Lan20g1261 809 Gene3D Cysteine proteinases 308 808 - -
Lan20g1261 809 Gene3D - 677 736 - -
Lan20g1261 809 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 260 IPR013083 -
Lan20g1261 809 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 622 663 IPR015940 -
Lan20g1261 809 CDD Peptidase_C19B 316 805 - -
Lan20g1261 809 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 681 721 IPR015940 -
Lan20g1261 809 Pfam UBA/TS-N domain 683 718 IPR015940 -
Lan20g1261 809 Pfam UBA/TS-N domain 624 660 IPR015940 -
Lan20g1261 809 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 316 331 IPR018200 GO:0004843|GO:0006511
Lan20g1261 809 SMART uba_6 683 720 IPR015940 -
Lan20g1261 809 SMART uba_6 624 662 IPR015940 -
Lan20g1261 809 PIRSF UBP 7 808 IPR016652 GO:0004843|GO:0016579
Lan20g1261 809 SMART Zf_UBP_1 186 241 IPR001607 GO:0008270
Lan20g1261 809 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 808 - -
Lan20g1261 809 Gene3D - 608 676 - -
Lan20g1261 809 SUPERFAMILY RING/U-box 165 273 - -
Lan20g1261 809 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 315 807 IPR028889 -
Lan20g1261 809 Pfam Ubiquitin carboxyl-terminal hydrolase 315 804 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1261 Lan-Chr20 18710933 18722498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1261 616 670 C2H2 Transcription Factor Family AT1G04850 38.182 6.68e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1261 K11836 - gmx:100805602 1376.69