Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1258 ATGCATAACAAGGGTTTTGAAGAATTTGGTAGCATGAGGAAGCGTCAAGTAGTAGTGAGAAGATCAGAGGAACCACCTACAAGAAGTGTTAGGAGTGTGAAATATGGAGAGTGCCAAAAGAATCATGCTGCTAATGTTGGAGGATATGCTGTTGATGGTTGCAGAGAATTCATGGCTAGTGGTGATGAAGGTACAGATTCTGCTCTCACTTGTGCTGCTTGTGGTTGCCATAGAAACTTCCACAAAAGAGAGGTTGAGACTGAAACAGTGAGTGGATGCTCTTCACCAACCTCTTCAGGAACTTGA 306 0.4346 MHNKGFEEFGSMRKRQVVVRRSEEPPTRSVRSVKYGECQKNHAANVGGYAVDGCREFMASGDEGTDSALTCAACGCHRNFHKREVETETVSGCSSPTSSGT* 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1258 101 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 16 96 - -
Lan20g1258 101 PANTHER BNAA09G44460D PROTEIN 16 96 - -
Lan20g1258 101 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 35 84 IPR006456 -
Lan20g1258 101 Pfam ZF-HD protein dimerisation region 33 85 IPR006456 -
Lan20g1258 101 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 34 85 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1258 Lan-Chr20 18600740 18601581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1258 12 100 Zinc finger-homeobox gene family AT3G28917 65.657 2.79e-40 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lan20g1258 ZF-HD_dimer 4.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1258 - - lang:109339447 176.407