Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1257 ATGGGAAGACCACCATGTTGTGATAAAGAAGGTGTGAAAAAGGGACCTTGGACTCCAGAAGAAGATATAATTTTGGTGTCTTATATACAGGAACATGGTCCTGGTAATTGGAGGGCTGTTCCTACAAATACTGGTTTGTCAAGGTGCAGCAAAAGTTGCAGACTTAGATGGACAAATTACCTGAGGCCAGGAATCAAGAGGGGCAACTTCACAGAACAAGAGGAAAAGATGATAATCCATCTTCAAGCACTTTTAGGAAATAGATGGGCTGCAATAGCTTCATACCTTCCACAAAGAACAGACAATGATATAAAGAACTATTGGAACACCTATTTGAAAAAGAGGCTCAAGAAATTGGAATCAGGAACTGAAGGAGGAAGCTTAGGAAATATGTACAATTCATCTTCAAAGCCAATACCTAGAGGCCAATGGGAAAGAAGGCTCCAAACTGATATCAACATGGCCAAAAAAGCTCTCAATGAAGCAATCTCACCAAACAAAATGGTTTCATTACCTGAACCAAATGATAGCAATCTTTCTAATGATATTGGATCCATAAAACAAGCAACACCTAATTCTATATCCTATGCTTCAAGTGCTGATAACATAGCTCGTTTGTTAAAGGGTTGGATGAAGAATCCACCAAATAAGGTTTCATCAAAATCTAACTCTATTATGAGTTCTCAAAATTCATTCAACAACTTGGCTGGATTTGACACTGCTTCTAGTGAAGGAACTCCAAGTAATAGGGCAAATGGAAGCACTAATAATGTTGAGTTGTCTGAGACTTTTGAGTCCTTGTTTGGTTATGGATCTATGGATTACTCTTCAAATTCTGAATTTTCTCCATCTTTGTCACCTGAAGCTAGTACTTTTTTCCAAGATGAGAGTAGGTATGGTACTACTAGTATTGCAGAAATACCATTCTCTTTGCTTGAGAAATGGCTTCTAGATGATTCTAAAAGTAGTTCAGATGCCACTTTGTTTTAA 990 0.3768 MGRPPCCDKEGVKKGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTYLKKRLKKLESGTEGGSLGNMYNSSSKPIPRGQWERRLQTDINMAKKALNEAISPNKMVSLPEPNDSNLSNDIGSIKQATPNSISYASSADNIARLLKGWMKNPPNKVSSKSNSIMSSQNSFNNLAGFDTASSEGTPSNRANGSTNNVELSETFESLFGYGSMDYSSNSEFSPSLSPEASTFFQDESRYGTTSIAEIPFSLLEKWLLDDSKSSSDATLF* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1257 329 CDD SANT 69 112 IPR001005 -
Lan20g1257 329 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 323 - -
Lan20g1257 329 CDD SANT 16 61 IPR001005 -
Lan20g1257 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lan20g1257 329 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan20g1257 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lan20g1257 329 Gene3D - 13 66 - -
Lan20g1257 329 SMART sant 13 63 IPR001005 -
Lan20g1257 329 SMART sant 66 114 IPR001005 -
Lan20g1257 329 Gene3D - 68 130 - -
Lan20g1257 329 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lan20g1257 329 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lan20g1257 329 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lan20g1257 329 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 323 - -
Lan20g1257 329 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1257 Lan-Chr20 18562192 18564159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1257 1 319 MYB Transcription Factor Family AT5G62470 50.413 7.03e-104 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan20g1257 Myb_DNA-binding 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1257 K09422 - gmx:780542 422.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0092 5 1093691 1095252 Lan20g1257 20 18562192 18564159 LSH