Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1248 ATGTCTAGCAGAAGGTCCAGGCATCAATCTTCAGGTTCTACAAGGATCTCTGATGACCAAATCATTGATCTTGTTTCAAAGTTGCGTCAACTTGTTCCTGAGATTCACCATAGGCGCTCTGATAAGGTTTCAGCATCAAAGGTCCTACAAGAAACATGCACCTACATCAGAAACTTACACAGAGAAGTTGATGACTTAAGTCAAAGGCTCTCTCAGTTGTTGACAACAATTGATTCTGATAGTGCTGAAGCTGCTATCATTAGGAGCCTAATTAACCAATAA 282 0.4043 MSSRRSRHQSSGSTRISDDQIIDLVSKLRQLVPEIHHRRSDKVSASKVLQETCTYIRNLHREVDDLSQRLSQLLTTIDSDSAEAAIIRSLINQ* 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1248 93 Gene3D - 1 88 IPR036638 GO:0046983
Lan20g1248 93 Pfam Helix-loop-helix DNA-binding domain 20 59 IPR011598 GO:0046983
Lan20g1248 93 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 5 59 IPR011598 GO:0046983
Lan20g1248 93 PANTHER TRANSCRIPTION REGULATOR 1 91 - -
Lan20g1248 93 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
Lan20g1248 93 Coils Coil 56 76 - -
Lan20g1248 93 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 78 IPR036638 GO:0046983
Lan20g1248 93 CDD bHLH_AtPRE_like 15 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1248 Lan-Chr20 18313906 18315887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1248 13 91 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 73.750 2.51e-37 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan20g1248 HLH 9.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1248 - - gmx:100796852 147.902
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0087 5 1037761 1039539 Lan20g1248 20 18313906 18315887 LSH
Lan8g0903 8 10737393 10739580 Lan20g1248 20 18313906 18315887 LSH
Lan20g1248 20 18313906 18315887 Lan8g0128 8 2052256 2057777 PCT
Lan8g0128 8 2052256 2057777 Lan20g1248 20 18313906 18315887 PCT