Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1242 ATGGCTTTCCCACCTTCTCACACTTTCATGTTTCAAACCCATCATGAAGATCATCATGACAACCTCCATTCAACTCCAAATCTCAATAACTCTTACCCCTCATTGCCACCACATCACTTTCATCAAGCTTTCAGGATGAACCGATCCATGTCATTTTCAGGCATAGAGAACAAGCAGTGTGATGAAGTGCATGGAGATGATGAATTATCAGATGATGGATCTCAGCTTGGGGAGAAGAAGAAGAGGCTCAACTTGGAACAAGTGAAGGCACTTGAGAAGAGTTTTGAGATAGGGAACAAGCTTGAACCTGAAAGGAAAATGCAACTTGCTAAAGCTTTAAGCCTTCAACCAAGACAAGTTGCTATATGGTTCCAAAACAGAAGAGCAAGATGGAAAACAAAGCAACTTGAGAGGGAATATGAAGTACTCAAGAAGCAGTTTGAAGCTCTCAAAGCTGATAATGATAACCTTAAGGCTCAGAACCAGAAACTACATGGAGAGTTACAAGCTCTAAAGAGTACAGATTGCTTTGAAACTGGAACAATTAGCTTCAAGAAAGAAACTGATCAAGGTTCTTGGAGCAATAGAAGTGATAACAGTTCAAATATTAATTTGGACCTTTCAAGAACACCAGTTATGAACAGCCCAGTATCTTGTCAGAATGCTAAAAATCTTCTACCCAATTCTCTAAAGCCAACAAGTATAACTCAGCTCCTACAATGTTCATCAAGATCAGATCTTCAAGAAGAAAGCTTCACCAACATCTTTCACAACATTGATGAGCAACAGAATTTTTGGCCATGGCCTGAACAAAACCATTTTCATTGA 828 0.3925 MAFPPSHTFMFQTHHEDHHDNLHSTPNLNNSYPSLPPHHFHQAFRMNRSMSFSGIENKQCDEVHGDDELSDDGSQLGEKKKRLNLEQVKALEKSFEIGNKLEPERKMQLAKALSLQPRQVAIWFQNRRARWKTKQLEREYEVLKKQFEALKADNDNLKAQNQKLHGELQALKSTDCFETGTISFKKETDQGSWSNRSDNSSNINLDLSRTPVMNSPVSCQNAKNLLPNSLKPTSITQLLQCSSRSDLQEESFTNIFHNIDEQQNFWPWPEQNHFH* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1242 275 ProSiteProfiles 'Homeobox' domain profile. 74 134 IPR001356 GO:0003677
Lan20g1242 275 Pfam Homeobox associated leucine zipper 134 173 IPR003106 GO:0006355|GO:0043565
Lan20g1242 275 ProSitePatterns 'Homeobox' domain signature. 109 132 IPR017970 GO:0000981|GO:0006355
Lan20g1242 275 Pfam Homeodomain 79 132 IPR001356 GO:0003677
Lan20g1242 275 SUPERFAMILY Homeodomain-like 68 136 IPR009057 -
Lan20g1242 275 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 272 IPR045224 GO:0003700
Lan20g1242 275 Gene3D - 71 149 - -
Lan20g1242 275 CDD homeodomain 79 135 IPR001356 GO:0003677
Lan20g1242 275 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 1 272 - -
Lan20g1242 275 Coils Coil 126 174 - -
Lan20g1242 275 SMART HOX_1 77 138 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1242 Lan-Chr20 18196151 18199389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1242 1 270 Homeobox Transcription Factor Family AT5G15150 50.680 2.04e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lan20g1242 Homeodomain 4.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1242 K09338 - gmx:100816097 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0085 5 1013669 1016806 Lan20g1242 20 18196151 18199389 LSH