Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1241 ATGGTACCTCTTCAAGGTCTCGAAATTCGACCTTTGTTTCTAGAAAGATACAAAGGGAAAAGTGACAAAGATGTAAAAAAGGAAACTGGTTCAAATGTTTGGACCAAAATGATGTTTTCCTTAGGTTGCATGGCTTTGTGGTCAAACACTGGAGATTCCTCAGGAGCAAATAAATATGATGATGGTAATGATAGAGACCAATCAGTATCCTCAACCAACAAGAATTCAGAATCTGAATCCCATCATGGCATAAGTGAGAAACTAAAGGCTTATCCAAATCTCAGAAGTTTCTCTTATAATGAGCTTAAGTTGGCAACACATAATTTTAAAGCTCGACATGTTCTTGGGGTGGGTGGCTTTGGCACTGTATACAAAGGATGGCTCAATCCAATTGAAAAATCTCCATTGAGATATGGAATAAAAATTCCAGTTGCAGTGAAGACTCTTAACCATGATGGATTTCAGGGTCATAAGGAATGGCTTGCTGAAGTTAACTATCTTGGTGAACTTCTTCATCCAAATCTAGTGAAATTGGTTGGATATTGCATTGAAGATGAACAAAGGCTACTTGTTTACGAGTTTATGTGTCGAGGAAGCTTGGAACGCCATTTATTTAGGAGAAATGTGTACCTTCCATGGTCTATCAGAATTAAAATTTTGCTTGGTGCTGCTAAGGGCCTTGCATTTCTGCATGAAGAAGCAGAAAGTCCTGTTATATTTCGAGACTTCAAAACATCAAATATCCTTTTGGATCGGGATTATAATGCAAAACTTTCTGATTTTGGGTTAGCTAAAGATGCACCAGTTGGAGACTTAACCCATGTGTCAACCCAGGTATTTGGAACACATGGCTATGCAGCTCCCGAGTATGTAACCACTGGACACCTTACATCGAAAAGTGATGTATATAGCTTTGGAGTTGTGCTATTGGAAATGCTTACTGGCCGAAAAACAGTGGACAACGATAAGCCTCGTGGTGAACGAATCTTAGTGGAATGGGCACGGTCAAAGCTTAAGTACAAATCAAGGTTAAATGAACTAATGGATCCTAGATTTAAGGATCAATTTCCAGTACATGGTGCTTCCAAGGGTCTAAGGTTGGCTGGGCAATGTCTTAGCTTTGATCCAAAAGCGAGACCTGTTATGAGTGCAGTGGTTCGAGAATTGACCGAGATAAGTGATATGCCATATTCATCGTCCTCTTCTCGACCCGTTAAGCCAAGCCCGCCTAATCAAGATTCAAGCTCATCGGAAAGAAAATCACTAATTCGCTTCAAACCCTCCCCACATCATCACCAAAATTATGCCCTTCCAACACCAAAACCTAGTGGTGAAAAAAGGCCTTGA 1347 0.4024 MVPLQGLEIRPLFLERYKGKSDKDVKKETGSNVWTKMMFSLGCMALWSNTGDSSGANKYDDGNDRDQSVSSTNKNSESESHHGISEKLKAYPNLRSFSYNELKLATHNFKARHVLGVGGFGTVYKGWLNPIEKSPLRYGIKIPVAVKTLNHDGFQGHKEWLAEVNYLGELLHPNLVKLVGYCIEDEQRLLVYEFMCRGSLERHLFRRNVYLPWSIRIKILLGAAKGLAFLHEEAESPVIFRDFKTSNILLDRDYNAKLSDFGLAKDAPVGDLTHVSTQVFGTHGYAAPEYVTTGHLTSKSDVYSFGVVLLEMLTGRKTVDNDKPRGERILVEWARSKLKYKSRLNELMDPRFKDQFPVHGASKGLRLAGQCLSFDPKARPVMSAVVRELTEISDMPYSSSSSRPVKPSPPNQDSSSSERKSLIRFKPSPHHHQNYALPTPKPSGEKRP* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1241 448 Pfam Protein tyrosine and serine/threonine kinase 111 389 IPR001245 GO:0004672|GO:0006468
Lan20g1241 448 MobiDBLite consensus disorder prediction 395 418 - -
Lan20g1241 448 PANTHER TYROSINE KINASE FAMILY PROTEIN 55 434 - -
Lan20g1241 448 MobiDBLite consensus disorder prediction 395 448 - -
Lan20g1241 448 CDD STKc_IRAK 115 392 - -
Lan20g1241 448 ProSitePatterns Protein kinases ATP-binding region signature. 115 147 IPR017441 GO:0005524
Lan20g1241 448 MobiDBLite consensus disorder prediction 56 85 - -
Lan20g1241 448 PANTHER OS01G0588500 PROTEIN-RELATED 55 434 - -
Lan20g1241 448 ProSiteProfiles Protein kinase domain profile. 109 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g1241 448 Gene3D Transferase(Phosphotransferase) domain 1 195 404 - -
Lan20g1241 448 SUPERFAMILY Protein kinase-like (PK-like) 92 418 IPR011009 -
Lan20g1241 448 Gene3D Phosphorylase Kinase; domain 1 83 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1241 Lan-Chr20 18139833 18146568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1241 47 422 Glycoside Hydrolase AT3G07070 44.591 4.55e-101 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lan20g1241 PK_Tyr_Ser-Thr 1.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1241 - - rcu:8287017 465.692