Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1235 ATGACGGAGGGTCATCAATTCAACAACATCACCCTTGGTGGCCGTGGCGGCACCAATACAGGGCAGATGAAAATATATTCAGAAGGCATTTTATGGAGGAGACAAGGTGGTGGTAAATTAATTGAAGTTGATAAAGATGATATAATGGGTGTGACATGGATGAAGGTTCCAAGGACCAATCAACTTGGTGTTCAGATTAAAGATGGGTTGTTCTACAAGTTCACTGGATTCCGTGATCAGGATGTTGCAAGTTTGACAACGTTTTTCCAAAACACCTTCGGAATAGAAGTACAGGAGAAGCAGCTTTCTGTTACTGGGCGTAATTGGGGAGAAGTTGATCTAAATGGAAATATGCTGGCTTTCATGGTTAGTTCAAAGCAAGCTTTCGAGCTGTCTGTAGCTGATGTTGCTCAAACACAGCTTCAAGGGAAAAATGATGTGATTTTGGAGTTTCATGTGGATGACACAACTGGAGCTAATGAGAAAGATTCGTTGATGGAGATAAGTTTCCACATACCAAATTCCAACACCCAGTTTATTGGTGATGAAAATTGTCCTCCCGCTCAAGTTTTCCGTGACCAAATCATGTCTATGGCTGATGTTGGTGTTGGAGGTGAAGATGCTGTCGTTACATTTGAGGGTATTGCAATCCTTACACCAAGGGGACGATACAGTGTTGAGTTACATTTGTCTTTCTTGCGGCTTCAAGGACAGGCTAATGATTTCAAAATCCAGTACAGCAGTGTGGTTCGCCTATTTTTACTTCCTAAGTCCAATCAGCCACATACCTTTGTCATTATCAGTCTTGACCCTCCTATTCGGAAAGGACAAACTTTGTACCCTCATATTGTTATGCAGTTTGAAACTGATTTAGTTGTGCAAAGCGAATTGTCAATGGGTGAAGATCTTTATAACACCAAATACAAGGACAAATTGGAGATGTCTTATAAGGGACTTATCCATGAAGTCTTCACTACAATACTGCGTGGATTATCTGGTGCCAAAGTTACCAAACCTGGAAAATTTAGGAGTTGTCAAGATGGTTATGCAGTGAAATCATCATTGAAAGCTGAAGATGGAATTCTGTACCCTCTTGAGAAGAGCTTCTTCTTTCTGCCTAAACCCCCCACCCTTATTCTTCATGAAGAGATTGACTATGTGGAATTTGAGCGACATGCTGCTGGTGGTTCAAATATGCATTATTTTGACCTTCTGGTCAGACTAAAATCTGACACAGAACATCTTTTCCGTAATATCCAGAGAAATGAATACCACAATTTGTATGGTTTTATCAGTTCAAAGGGTTTGAAAATTATGAACATAGGAGATGCCCAGGCCCCTGGTGGTATGGCTAAGGTTCTTGAGACCGATGATGATGATGCTGTTGATCCACATCTTGAGCGCATTAAAAATGCAGCTGGTGGTGGAGATGAAAGTGACGAGGAGGACGAAGATTTTGTTCTTGACAAGGATGATGGAGGTTCTCCGACTGATGATTCTGGAGGAGATGATTCTGATGCTAGTCAAAGTGGCGATGATGAGAAAGAGAAGCCTGCTAAAAAGGAACCAAAGAAGGATCTGTCTTCTAAGGCATCTACTTCCAAGAAGAAATCAAAAGATGCTGATGAAGATGGAAAGAAGAAAAAACAGAAGAAGAAAAAGGACCCAAATGCACCCAAGAGGGCATTGTCTGGTTTCATGTTTTTTTCTCAAATGGAAAGAGAGAATTTAAAGAAAACTAATCCTGGAATTTCGTTTACGGATGTGGGAAGAGTACTTGGAGAGAAATGGAAAAAGATGTCAGTGGAAGAGAAGGAACCATATGAAGCAAAAGCCCGTGCAGATAAAATACGTTACAAGGATGAGATTAGTGGTTACAACAAGAATCCACAACCCATGAATGTTGATTCGGGAAATGAATCTGACAGTTCATAA 1935 0.4072 MTEGHQFNNITLGGRGGTNTGQMKIYSEGILWRRQGGGKLIEVDKDDIMGVTWMKVPRTNQLGVQIKDGLFYKFTGFRDQDVASLTTFFQNTFGIEVQEKQLSVTGRNWGEVDLNGNMLAFMVSSKQAFELSVADVAQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFIGDENCPPAQVFRDQIMSMADVGVGGEDAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFETDLVVQSELSMGEDLYNTKYKDKLEMSYKGLIHEVFTTILRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLVRLKSDTEHLFRNIQRNEYHNLYGFISSKGLKIMNIGDAQAPGGMAKVLETDDDDAVDPHLERIKNAAGGGDESDEEDEDFVLDKDDGGSPTDDSGGDDSDASQSGDDEKEKPAKKEPKKDLSSKASTSKKKSKDADEDGKKKKQKKKKDPNAPKRALSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKKMSVEEKEPYEAKARADKIRYKDEISGYNKNPQPMNVDSGNESDSS* 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1235 644 MobiDBLite consensus disorder prediction 620 644 - -
Lan20g1235 644 MobiDBLite consensus disorder prediction 470 567 - -
Lan20g1235 644 Gene3D - 95 179 IPR038167 -
Lan20g1235 644 MobiDBLite consensus disorder prediction 508 550 - -
Lan20g1235 644 Gene3D - 1 93 IPR011993 -
Lan20g1235 644 PANTHER FACT COMPLEX SUBUNIT SSRP1-B 1 642 - -
Lan20g1235 644 PRINTS Structure-specific recognition protein signature 219 235 IPR000969 GO:0003677|GO:0005634
Lan20g1235 644 PRINTS Structure-specific recognition protein signature 241 257 IPR000969 GO:0003677|GO:0005634
Lan20g1235 644 PRINTS Structure-specific recognition protein signature 264 280 IPR000969 GO:0003677|GO:0005634
Lan20g1235 644 PRINTS Structure-specific recognition protein signature 329 342 IPR000969 GO:0003677|GO:0005634
Lan20g1235 644 PRINTS Structure-specific recognition protein signature 356 374 IPR000969 GO:0003677|GO:0005634
Lan20g1235 644 PRINTS Structure-specific recognition protein signature 374 391 IPR000969 GO:0003677|GO:0005634
Lan20g1235 644 PRINTS Structure-specific recognition protein signature 400 416 IPR000969 GO:0003677|GO:0005634
Lan20g1235 644 PRINTS Structure-specific recognition protein signature 416 434 IPR000969 GO:0003677|GO:0005634
Lan20g1235 644 Gene3D High mobility group box domain 542 641 IPR036910 -
Lan20g1235 644 SUPERFAMILY HMG-box 550 634 IPR036910 -
Lan20g1235 644 SMART Rtt106_2 348 441 IPR013719 -
Lan20g1235 644 CDD HMGB-UBF_HMG-box 559 624 - -
Lan20g1235 644 SMART hmgende2 558 628 IPR009071 -
Lan20g1235 644 MobiDBLite consensus disorder prediction 627 644 - -
Lan20g1235 644 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 559 627 IPR009071 -
Lan20g1235 644 Pfam Histone chaperone Rttp106-like 350 439 IPR013719 -
Lan20g1235 644 Pfam POB3-like N-terminal PH domain 6 98 IPR035417 -
Lan20g1235 644 Gene3D - 339 447 IPR011993 -
Lan20g1235 644 Pfam HMG (high mobility group) box 559 627 IPR009071 -
Lan20g1235 644 Pfam Structure-specific recognition protein (SSRP1) 106 174 IPR024954 -
Lan20g1235 644 SUPERFAMILY PH domain-like 206 440 - -
Lan20g1235 644 CDD PH2_SSRP1-like 342 441 - -
Lan20g1235 644 Gene3D - 199 338 - -
Lan20g1235 644 PANTHER FACT COMPLEX SUBUNIT SSRP1 1 642 - -
Lan20g1235 644 CDD PH1_SSRP1-like 207 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1235 Lan-Chr20 18065247 18071340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1235 555 626 ARID Transcription Factor Family AT1G04880 40.278 2.11e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lan20g1235 POB3_N 2.3e-23 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1235 K09272 - gmx:100805034 1042.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0083 5 979596 985805 Lan20g1235 20 18065247 18071340 LSH