Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1234 ATGGGGAAAATAATGGTGAGAAGTGGAACTAAGGTTGCTTTTATCATCTTGGTTACTTTCACCATTGTTATTCCTTGCCTTGAGGCTGGAATAGCTGAGTTTGATGATTATCTCAAAGCTCAAGCTGAGGCAGCCAAAAAACTTGCTTTAGAGACCTATGTGCCAAACCCAGAAGAAATTGCAGAGGACCTTAATCTACATGTTCATAAAGCAATCCAAGAGTATGAGCTTGAGTTGACAAACAACACAACAAGAAGAGAGTTAAGGCAAGGGAAAAAAGCCAGAGGACCATGCCAAGCCACCAATCCCATTGACAGATGCTGGAGGTGCCAAAAAAACTGGGCCAATGACCGTTACAGGTTAGCCAAATGCGGCCGAGGGTTCGGACGGAGAGCCACGGGTGGCCTTGGTGGCCGAATCTATGTAGTTACCAACCCATCAGACAACAATGTAGCAGAGCCTGCACCAGGAACTCTTCGTTTTGGTGCAGTCCAAAAGGGTCCATTGTGGATCATATTCAAAACTAGTATGGTCATTAATTTGCAACAAGAATTGATGGTTTCTTCAGACAAGACCATTGATGGTCGTGGTGTTAATGTTCAGATTAAGGGTGGTGCTGGAATCACAATGCAGTTTGTTAACAATGTTATTATCCACAACCTTAGGATTAGTAAAATTGTAGCTAAGAATGGTGGCATGATAAGAGATTCTTTTAACCATGTTGGGTTTAGAACAAGGAGTGATGGTGATGCTATCTCTATTTATCAATCCTCTAACATTTGGATCGATCATCTTTCTTTGTCTCAAAGTGAGGATGGTCTTGTTGATGTTATTCAAGGTTCCACTGGCGTCACAATCTCAAATTGCCACATGACCAAGCATAATGATGTGATGCTATTAGGAGCAAGTGATAATTTCAGTGGTGACAAGATCATGCAAGTAACAGTAGCATTCAACCACTTTGGGCAAGGATTGATTCAGAGAATGCCAAGAATAAGATGGGGTTTTGTTCATGTTGTGAACAATGACTACACTCACTGGCTCATGTATGCACTTGGTGGTAGTTCAGGGCCAACAGTTCTAAGCCAAGGAAATAGATTCATTGCACCAAACAATGATGCAGCTAAGGAAATAACACATAGAGATTATGCATCACCAGATGTATGGAAAAATTGGCAATGGAGTTCACAGGAAGATTTTTTCATGAATGGTGCTAAGTTTACTGAATCTGGTAAACATGTTACAAATCTTCCTTACAAGAAACAATTTATAATGAAACCAAGACCTGGGATTTATGCTAATAGGCTAACTAGGTGGTCTGGTGCACTTCCTTGCATTCCTAACTTGCCTTGCTAG 1356 0.4115 MGKIMVRSGTKVAFIILVTFTIVIPCLEAGIAEFDDYLKAQAEAAKKLALETYVPNPEEIAEDLNLHVHKAIQEYELELTNNTTRRELRQGKKARGPCQATNPIDRCWRCQKNWANDRYRLAKCGRGFGRRATGGLGGRIYVVTNPSDNNVAEPAPGTLRFGAVQKGPLWIIFKTSMVINLQQELMVSSDKTIDGRGVNVQIKGGAGITMQFVNNVIIHNLRISKIVAKNGGMIRDSFNHVGFRTRSDGDAISIYQSSNIWIDHLSLSQSEDGLVDVIQGSTGVTISNCHMTKHNDVMLLGASDNFSGDKIMQVTVAFNHFGQGLIQRMPRIRWGFVHVVNNDYTHWLMYALGGSSGPTVLSQGNRFIAPNNDAAKEITHRDYASPDVWKNWQWSSQEDFFMNGAKFTESGKHVTNLPYKKQFIMKPRPGIYANRLTRWSGALPCIPNLPC* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1234 451 SUPERFAMILY Pectin lyase-like 91 428 IPR011050 -
Lan20g1234 451 PANTHER PECTATE LYASE 9 451 - -
Lan20g1234 451 PRINTS Pollen allergen Amb family signature 124 141 IPR018082 -
Lan20g1234 451 PRINTS Pollen allergen Amb family signature 148 173 IPR018082 -
Lan20g1234 451 PRINTS Pollen allergen Amb family signature 184 200 IPR018082 -
Lan20g1234 451 PRINTS Pollen allergen Amb family signature 248 269 IPR018082 -
Lan20g1234 451 PRINTS Pollen allergen Amb family signature 328 347 IPR018082 -
Lan20g1234 451 PRINTS Pollen allergen Amb family signature 350 369 IPR018082 -
Lan20g1234 451 PRINTS Pollen allergen Amb family signature 392 416 IPR018082 -
Lan20g1234 451 PRINTS Pollen allergen Amb family signature 422 445 IPR018082 -
Lan20g1234 451 SMART amb_all 176 373 IPR002022 -
Lan20g1234 451 PANTHER PECTATE LYASE 18-RELATED 9 451 IPR045032 GO:0030570
Lan20g1234 451 Pfam Pectate lyase 184 367 IPR002022 -
Lan20g1234 451 Pfam Pectate lyase, N terminus 31 88 IPR007524 GO:0030570
Lan20g1234 451 Gene3D - 101 444 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1234 Lan-Chr20 18060909 18063927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1234 16 451 Polysaccharide Lyase AT5G15110 51.923 3.11e-175 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1234 K01728 - gmx:100810615 658.677