Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1230 ATGGGGTTTGGAAATAATGATAATAATGCAATTGAAGTTGGGAGTTTAGAAGTGGGAAAGTCAAAGGTAGATGGTGGTGAAGAGAAGAAGAGAGGATTTTTGCCCAAATTTAGTTTATGTGGAAGCTGTATACCTTCAACATCAAAGGTTGATACTTCAATAAGTGGCACTAGTTCCCAAAATGTGGAAAAAAAGTCATCATTTGAAAAAAGCACACATGGAACCGTTGCTCCTCCAGAGTCCTCATCAACAAATAGTAATGCGGAAAGTATCCCTTCTACTCCAAAATTCAGTGAGGAGTTGAAGGTTGCTTCTAGTTTGAGAAAATTCACATTCAATGGTCTTAAGGTGGCAACTAGGAATTTCAGACCAGAGAGTCTTCTTGGTGAAGGAGGGTTCGGTTGTGTCTTCAAGGGTTGGATTGAGGAGAACGGAACTGCACCTGTGAAACCCGGCACTGGGCTAACTGTCGCAGTCAAGACCCTCAACCACAACGGAAATCAGGGTCATAAAGAATGGCTTGCCGAGTTAAACTATCTTGGTGACCTTCTCCATCCTAATCTAGTTAAACTGATTGGTTTCTGCATTGAAGATGACCAAAGATTATTAGTTTATGAGTTCATGCCCCGAGGCAGTTTGGAGAACCATCTCTTTAGAAAAGGGCCTTTGCCTCTTCCTTGGTCCATTAGAATGAAAATTGCTCTTGGTGCTGCAAAAGGTCTCGCTTTTCTCCATGAAGAAGCTAAGAGGCCAATAATATATCGCGATTTCAAGACATCTAATATTTTGTTAGATGCGGAATACAATGCGAAGCTCTCTGATTTTGGATTGGCCAAAGACGGTCCCGAGGGGGAAAAGACACATGTATCAACAAGAGTTATGGGAACATATGGATATGCCGCTCCGGAGTATGTTATGACAGGACATTTGACATCGAAGAGTGATGTCTACAGTTTCGGAGTAGTGCTACTGGAAATGCTCACTGGACGGCGATCTATTGATAAGAGAAGACCAAATGGTGAACACAATCTGGTGGAGTGGGCAAGACCTGTACTTGGAAACTGGAGGATGTTCCTCCGGATGATTGATCCCCGCCTTGAAGGTCACTTCTCAGTTAAAGGAGCACAGAAAGCTGCTCAGCTGGCTGCTCAATGCCTTAGCCGAGATCCGAAAGCTAGACCTGTCATGAGTGAAGTTGTTCAAACTTTAAAACCTTTGCCAAACCTTAAGGACATGGCTATCTCCTCTTACCACTTCCAGGTTGCGCGAGTTGATCGCACTTTGTCCATGCCGAATCGTAAAAGTGTTATTAAAACACAGTTAGTATCTTTACCAAAGAAGGGTCAACCTGTTAGAACCTTGTCAAGTCCAAATGCACCACATGGTTCTCCATATCCTCATTATAGCAAATCTCCAAGACCTAATAGTGGCTAA 1434 0.4303 MGFGNNDNNAIEVGSLEVGKSKVDGGEEKKRGFLPKFSLCGSCIPSTSKVDTSISGTSSQNVEKKSSFEKSTHGTVAPPESSSTNSNAESIPSTPKFSEELKVASSLRKFTFNGLKVATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHNGNQGHKEWLAELNYLGDLLHPNLVKLIGFCIEDDQRLLVYEFMPRGSLENHLFRKGPLPLPWSIRMKIALGAAKGLAFLHEEAKRPIIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGEKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKRRPNGEHNLVEWARPVLGNWRMFLRMIDPRLEGHFSVKGAQKAAQLAAQCLSRDPKARPVMSEVVQTLKPLPNLKDMAISSYHFQVARVDRTLSMPNRKSVIKTQLVSLPKKGQPVRTLSSPNAPHGSPYPHYSKSPRPNSG* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1230 477 Gene3D Transferase(Phosphotransferase) domain 1 208 423 - -
Lan20g1230 477 Pfam Protein kinase domain 125 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g1230 477 ProSiteProfiles Protein kinase domain profile. 122 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g1230 477 PANTHER RECEPTOR-LIKE KINASE PLANT 56 468 - -
Lan20g1230 477 MobiDBLite consensus disorder prediction 444 477 - -
Lan20g1230 477 MobiDBLite consensus disorder prediction 41 94 - -
Lan20g1230 477 SUPERFAMILY Protein kinase-like (PK-like) 96 403 IPR011009 -
Lan20g1230 477 PANTHER OS01G0588500 PROTEIN-RELATED 56 468 - -
Lan20g1230 477 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Lan20g1230 477 MobiDBLite consensus disorder prediction 1 94 - -
Lan20g1230 477 CDD STKc_IRAK 128 406 - -
Lan20g1230 477 ProSitePatterns Protein kinases ATP-binding region signature. 128 160 IPR017441 GO:0005524
Lan20g1230 477 Gene3D Phosphorylase Kinase; domain 1 102 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1230 Lan-Chr20 18022894 18027908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1230 108 419 Glycoside Hydrolase AT3G07070 55.732 5.24e-116 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lan20g1230 Pkinase 6.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1230 - - gmx:100499647 787.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0079 5 955565 963987 Lan20g1230 20 18022894 18027908 LSH