Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1224 ATGAGTAGTATTATTGGTGGGGATATTGATAAAAGTAGTGGCATGGTTAGAAAGAAAAAGAATGGTTCTATTAGGTCCATTTTCATGCATGCTGATGGCCATGACTGGTTTCTTATGGTCTTCGGTTTCATTGGTGCCATTGGTGATGGCTTCTCTATCCCTTTGGTGTTGCTTATCACTAGCAAAATTATGAATAATATTGGTGGTTCATCTATCAACTCAGGAAGCACTTTCATCCAGAAAATGAATCAGAATGCGGTGGATTTGCTATACTTGGCTATTGGATCTTTTGTTGCTTGCTTCTTGGAGGGATATTGTTGGACAAGAACAGGTGAAAGACAAGCTGCAAGAATGAGAGTTAGGTACTTAAAAGCAATTCTGAGACAAGAAGTTGCATACTTTGATTTGCATGTCACAAGCACTTCTGAAGTTATCACTAGTGTCTCTAATGATAGTCTTGTAATTCAAGATTGCCTTGCTGAAAAGGCACCAAATTTTTTGACAAATATATCAATGTTTGCTGGGAGCTACATAGTGGCTTTTGCATTACTTTGGAGATTGGCAATAGTGGGGTTCCCTTTTGTGATTCTCCTTGTGATCCCTGGTTTAATTTATGGAAGAACATTAATGGGTTTGGCTAGGAAGATAAGAGAAGAATATAATAAAGCTGGTACAATAGCTGAACAAGCAATATCATCCATTAGAACTGTGTATTCTTTTGTTGGGGAAAACAAGACCATAGTTGCTTTCTCTGATTCTCTACAAGGGTCAGTTAAGTTAGGGTTAAAACAAGGCTTGGCTAAAGGGTTAGCCATTGGAAGCAATGGTGTTGTTTTTGCTATTTGGTCCTTTATGTCTTGGTATGGTAGCAGAATGGTTATGTATCATGGCTCTAAAGGAGGGACTGTTTTTGCTGTTGGAGCTTCTATATCTGTTGGTGGATTAGCATTAGGCGCTGCTTTATCTAATGTGAAGTACTTCTCAGAAGCAAGCAGTGCAGCAGAACAAGTAATGGAAGTGATAAGAAGAGTTCCAAAGATTGATTCAGACAACATGGATGGTGATATTCTAGAGAATATTTCAGGAGAAGTTGAATTTGATAAGGTTAAATTTGCATACCCATCAAGGCCAGACAGCATTATATTGAACGATATGTGCTTAAAGGTTCAAGCAGGTAAGACATTGGCCTTAGTTGGTGGGAGTGGGTCAGGAAAATCAACAGTGATAGGACTTTTGCAAAGGTTTTATGACCCTATTGGAGGAGAGATAAGGGTTGATGGGGTTGCTATTAATAAGTTGCAAATAAAGTGGTTAAGGTCTCAAATGGGTTTGGTTAGTCAAGAACCTGTTTTATTTGGAACAAGTATTAAGGAGAATATACTTTTTGGAAGAGAGGATGCTAATGAAAATGAGATTGTGGAGTCTGCTAAAGCTTCCAATGCTCATAATTTCATCTCTATGTTGCCTAATGGATACAATACCCAAGTTGGTGAAAGAGGAGTTCAAATGTCTGGTGGACAAAAACAAAGAATAGCAATTGCTAGAGCAATTATAAAAAAACCAAGAATCCTTCTCCTTGATGAAGCAACAAGTGCATTAGACTCAGAATCTGAAAGAATTGTGCAAGAAGCTCTAGACAAAGCAGCATTAGGAAGAACTACAATTATCATAGCTCACAGATTATCCACTATTCGAAATGCAGATACTATAGCTGTTATGCAAAATGGAAAAATCATGGAAATGGGGTCACATAATGAACTTATACAAAATGTTCATGGTCTTTATACTTCACTAATTCATCTTCAGCAAATAGAAAACACAAAAGGTGACCAAGATGATTATAATAACACTTACCCTCTTCCTAATTCATCTATATTATCAAATAGAGAAAACATGCACAACACTAGTAGCCGAAGACTATCAATTGTGAGTCGTTCTAGTAGCGCGAATTCAGCGCTGCGCGCTTCGATCAATGATGGTGATGATGTTGAAGATGTTGTAGAGGATGACAAGTTACCTGTTCCTTCATTTTGGAGGTTGCTGGCATTGAATTTACCTGAGTGGAAGCAAGCATGTTTGGGATGCTTGAATGCATTGTTTTTTGGTGCTGTTCAACCTACTTATGCATTTGCAATGGGTTCAATGATATCTGTTTATTTTCTAACAGATCATGAGGAGATTAAGAAGAAGACAATGATATATTCTCTGTGTTTTTTGGGATTAGCTGTGTTCTCTTTGGTTGTTAATATCTTACAGCATTATAATTTTGCTTACATGGGTGAGTACTTGACCAAAAGGGTGAGAGAGAGAATGTTTTCTAAAATTCTCACTTTTGAGGTTGGGTGGTTTGATCAGGATCAGAATTCCACTGGTGCTGTTTGCTCTAGACTTGCAAAAGATGCCAATGTGGTAAGGTCATTAGTAGGAGACAGAATGGCTCTATTGGTACAAACAATCTCAGCAGTGGTAATAGCCTGCACAATGGGCTTGATCATTGCATGGAGATTAGCCATTGTTATGATAGCAGTTCAGCCCATTATCATAGCATGCTTCTACACAAGACGTGTCTTACTCAAAAGCATGTCAGAAAAGGCCATAAAGTCCCAAGATGAAAGTAGCAAGCTAGCTGCAGAAGCTGTTTCCAACCTTAGAACCATTACTGCTTTCTCTTCTCAAGATAGAATCCTCAAAATGCTAGAAAAAGCCCAAGAAGGCCCAAGAATAGAGAGCATTAGACAATCATGGTTTGCAGGACTTGGGCTTGCATGTTCCCAGAGCCTCACATCATGCACATGGGCCTTAGATTTTTGGTATGGTGCCAAGCTTATCTCACATGGGTACATCACAAGTAAGCAACTTTTTGAGACCTTCATGATATTGGTAAGCACAGGTAGGGTCATTGCTGATGCAGGTAGCATGACTAGTGACCTTGCTAAAGGAGCAGATGCTGTGGGCTCAGTTTTTGCAGTCCTTGATAGGTACACAAAAATTGAGCCTGATGACACAGAAGGTTACAAGCCAGAGAAGTTAAGAGGCCAAATTGAACTAAATGATGTCCATTTTGCATATCCAGCTAGGCCTAATGTAATGATCTTCCAAGGCTTCTCAATGAAAATTGATGCTGGAAAATCAACAGCATTGGTAGGACAAAGTGGTTCAGGCAAGTCAACAATAATAGGCTTAATAGAGAGATTCTATGATCCACTAAAAGGGACAGTAACATTAGATGGTAGAGACATAAAGTCCTATCACCTAAGATCACTTAGGACTCACATTGCACTAGTGAGTCAAGAACCAACATTGTTTGGTGGGAGCATAAGGGATAACATTGCATATGGATCTTCTGATAATAAAACTAATGAAGCTGAGATAATAGAAGCATCAAGGGCTGCAAATGCACATGACTTCATTGCAAGCTTGAAAGAAGGTTATGACACATTCTGTGGTGACAAAGGTGTGCAACTTTCTGGGGGTCAGAAGCAAAGAATTGCAATAGCAAGGGCCATATTAAAGAACCCTGAGGTGTTGCTTATGGATGAAGCTACAAGTGCACTTGATAGTCAATCTGAGAAGCTTGTGCAAGATGCATTGGAAAAGGTTATGGTAGGAAGGACTAGTGTTGTTATAGCACATAGATTGAGCACTATACAAAATTGTGATGTGATTGCTGTGTTGGATAAAGGAAATGTTGTGGAAAAAGGAACACATTCTTCTTTGTTGGGTAAGGGACCAAGTGGAGCTTATTACTCTTTAGTAAGTCTTCAAAGAAGACCATCAAACTAA 3783 0.3886 MSSIIGGDIDKSSGMVRKKKNGSIRSIFMHADGHDWFLMVFGFIGAIGDGFSIPLVLLITSKIMNNIGGSSINSGSTFIQKMNQNAVDLLYLAIGSFVACFLEGYCWTRTGERQAARMRVRYLKAILRQEVAYFDLHVTSTSEVITSVSNDSLVIQDCLAEKAPNFLTNISMFAGSYIVAFALLWRLAIVGFPFVILLVIPGLIYGRTLMGLARKIREEYNKAGTIAEQAISSIRTVYSFVGENKTIVAFSDSLQGSVKLGLKQGLAKGLAIGSNGVVFAIWSFMSWYGSRMVMYHGSKGGTVFAVGASISVGGLALGAALSNVKYFSEASSAAEQVMEVIRRVPKIDSDNMDGDILENISGEVEFDKVKFAYPSRPDSIILNDMCLKVQAGKTLALVGGSGSGKSTVIGLLQRFYDPIGGEIRVDGVAINKLQIKWLRSQMGLVSQEPVLFGTSIKENILFGREDANENEIVESAKASNAHNFISMLPNGYNTQVGERGVQMSGGQKQRIAIARAIIKKPRILLLDEATSALDSESERIVQEALDKAALGRTTIIIAHRLSTIRNADTIAVMQNGKIMEMGSHNELIQNVHGLYTSLIHLQQIENTKGDQDDYNNTYPLPNSSILSNRENMHNTSSRRLSIVSRSSSANSALRASINDGDDVEDVVEDDKLPVPSFWRLLALNLPEWKQACLGCLNALFFGAVQPTYAFAMGSMISVYFLTDHEEIKKKTMIYSLCFLGLAVFSLVVNILQHYNFAYMGEYLTKRVRERMFSKILTFEVGWFDQDQNSTGAVCSRLAKDANVVRSLVGDRMALLVQTISAVVIACTMGLIIAWRLAIVMIAVQPIIIACFYTRRVLLKSMSEKAIKSQDESSKLAAEAVSNLRTITAFSSQDRILKMLEKAQEGPRIESIRQSWFAGLGLACSQSLTSCTWALDFWYGAKLISHGYITSKQLFETFMILVSTGRVIADAGSMTSDLAKGADAVGSVFAVLDRYTKIEPDDTEGYKPEKLRGQIELNDVHFAYPARPNVMIFQGFSMKIDAGKSTALVGQSGSGKSTIIGLIERFYDPLKGTVTLDGRDIKSYHLRSLRTHIALVSQEPTLFGGSIRDNIAYGSSDNKTNEAEIIEASRAANAHDFIASLKEGYDTFCGDKGVQLSGGQKQRIAIARAILKNPEVLLMDEATSALDSQSEKLVQDALEKVMVGRTSVVIAHRLSTIQNCDVIAVLDKGNVVEKGTHSSLLGKGPSGAYYSLVSLQRRPSN* 1261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1224 1260 SUPERFAMILY ABC transporter transmembrane region 33 348 IPR036640 GO:0005524|GO:0016021
Lan20g1224 1260 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 24 1257 IPR039421 -
Lan20g1224 1260 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 364 600 IPR003439 GO:0005524
Lan20g1224 1260 Gene3D ABC transporter type 1, transmembrane domain 27 606 IPR036640 GO:0005524|GO:0016021
Lan20g1224 1260 Gene3D ABC transporter type 1, transmembrane domain 637 1002 IPR036640 GO:0005524|GO:0016021
Lan20g1224 1260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1005 1255 IPR027417 -
Lan20g1224 1260 Pfam ABC transporter 1033 1183 IPR003439 GO:0005524
Lan20g1224 1260 Pfam ABC transporter 382 531 IPR003439 GO:0005524
Lan20g1224 1260 Gene3D - 354 603 IPR027417 -
Lan20g1224 1260 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 603 IPR027417 -
Lan20g1224 1260 ProSitePatterns ABC transporters family signature. 503 517 IPR017871 GO:0005524
Lan20g1224 1260 SMART AAA_5 391 577 IPR003593 -
Lan20g1224 1260 SMART AAA_5 1041 1235 IPR003593 -
Lan20g1224 1260 Pfam ABC transporter transmembrane region 693 962 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lan20g1224 1260 Pfam ABC transporter transmembrane region 40 305 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lan20g1224 1260 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 24 1257 - -
Lan20g1224 1260 MobiDBLite consensus disorder prediction 610 631 - -
Lan20g1224 1260 Gene3D - 1004 1259 IPR027417 -
Lan20g1224 1260 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1014 1252 IPR003439 GO:0005524
Lan20g1224 1260 CDD ABC_6TM_Pgp_ABCB1_D2_like 681 997 - -
Lan20g1224 1260 ProSitePatterns ABC transporters family signature. 1155 1169 IPR017871 GO:0005524
Lan20g1224 1260 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 698 979 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lan20g1224 1260 CDD ABC_MTABC3_MDL1_MDL2 1014 1255 - -
Lan20g1224 1260 CDD ABC_MTABC3_MDL1_MDL2 364 602 - -
Lan20g1224 1260 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 337 - -
Lan20g1224 1260 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 40 329 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lan20g1224 1260 SUPERFAMILY ABC transporter transmembrane region 678 998 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1224 Lan-Chr20 17848412 17858056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1224 15 1256 Calmodulin-binding Proteins AT2G36910 43.854 0.0 1056
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1224 K05658 - gmx:100807709 1992.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0067 5 798437 803274 Lan20g1224 20 17848412 17858056 LSH