Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1222 ATGAGGAGGACAAGTGCTCATTCAAATGGCCAAAATCAAATTCCTAAAGTTGGAGGCAGAGTAGCATCTGTTTTGCAAAAACAGAATACAAATGATGCTCTATCCTATTTGAATGAAGTGAAAGACACGTTTCAGGACCAAAGTGAAAAATATGACATGTTCCTTGCTGTTATGAAAGATCACAAGGCTCAAAGGATTGACATTGCTGGTGTCGTAGCAAGGGTGAAGGAGCTATTCAAAGGGCACAACAATTTGATTTCTGGGTTTAATACTTTCTTGCCAATGGAATTTGAGATAACACCAGATGAGGATGATGCACCTCCAAAGAAATCAAACGAATTTGACAGCGCTATGAGTTTCGTGAACAAGATAAAGCAACGACTCCAGAATGATGAGCAGGCTTACAAATCATTCTTGAAACTTTTGAATAAGTACCGTAAAGGGCGTATGGAAATGAATGATGTTTATAGTGAGATTGCTATCCTTTTTAAGGACCATGGCGATTTATTGGACGAATTTGCTGGATACATACCAAATACTTTCGGAACACATTCTACACAGGATGCTCCATCTGGCCAGAAATCATTGAACATAGACAAGCAACCTTCTCAAGGAGACATGCTTCCTGATAAGAAGAAACTTGTCAAAAATGTTGAAGGTGGAGGCAAAGAGAAGGAAAGATACATAGATAACAATGGAATAATCAAAAGGAATGATTTGAAGAAATTGGTTGCTCCCTTTTTAAATGAAGGGAATGATTCACCTCCCATGATCGTGATGGTGTTGGTGGCGATGATGGTGGTTTCACTAGCGATACTAGTAGGAGTGATGTGGCAAAAGATGAGTAAGATAGAATAA 858 0.3881 MRRTSAHSNGQNQIPKVGGRVASVLQKQNTNDALSYLNEVKDTFQDQSEKYDMFLAVMKDHKAQRIDIAGVVARVKELFKGHNNLISGFNTFLPMEFEITPDEDDAPPKKSNEFDSAMSFVNKIKQRLQNDEQAYKSFLKLLNKYRKGRMEMNDVYSEIAILFKDHGDLLDEFAGYIPNTFGTHSTQDAPSGQKSLNIDKQPSQGDMLPDKKKLVKNVEGGGKEKERYIDNNGIIKRNDLKKLVAPFLNEGNDSPPMIVMVLVAMMVVSLAILVGVMWQKMSKIE* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1222 285 PANTHER SIN3B-RELATED 18 248 IPR039774 GO:0003714
Lan20g1222 285 MobiDBLite consensus disorder prediction 184 202 - -
Lan20g1222 285 ProSiteProfiles PAH domain profile. 26 96 IPR003822 GO:0006355
Lan20g1222 285 MobiDBLite consensus disorder prediction 184 208 - -
Lan20g1222 285 Gene3D Paired amphipathic helix 32 94 IPR036600 GO:0006355
Lan20g1222 285 ProSiteProfiles PAH domain profile. 110 180 IPR003822 GO:0006355
Lan20g1222 285 SUPERFAMILY PAH2 domain 107 178 IPR036600 GO:0006355
Lan20g1222 285 PANTHER PAIRED AMPHIPATHIC HELIX SIN3-LIKE PROTEIN-RELATED 18 248 - -
Lan20g1222 285 Pfam Paired amphipathic helix repeat 49 93 IPR003822 GO:0006355
Lan20g1222 285 Pfam Paired amphipathic helix repeat 134 174 IPR003822 GO:0006355
Lan20g1222 285 Gene3D Paired amphipathic helix 109 180 IPR036600 GO:0006355
Lan20g1222 285 SUPERFAMILY PAH2 domain 26 94 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1222 Lan-Chr20 17806101 17815975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1222 18 107 WRKY Transcription Factor Family AT4G12020 53.846 1.69e-21 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lan20g1222 PAH 2.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1222 K11644 - gmx:100812405 243.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0066 5 783506 794528 Lan20g1222 20 17806101 17815975 LSH
Lan8g0882 8 10527470 10538346 Lan20g1222 20 17806101 17815975 LSH