Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1213 ATGGGAGAGATTCAACAAACTCTTAAGCTCTTAGTCCATAGAAAAATCACACACAACAACAAGAACAAAAAACCAGAACCCATTACCCCAAGGCTCAAATGGAAGCAAATGTTTTTCCAACAAACACCTTCAAAACCCAACACCAAAAACAAAATTACTGAAAAGCCCCCAGAAGAATTCCTCTGTCCCATAACCAAAACCCTTATGTCAGACCCAGTTATTGTATCTTCTGGTCACTCCTTTGATCGAGTCACTGTTCAAACTTGTCAAAATCTCAACTTTACCCCTCATCTCTCTGATGGCACTACCCCTGATTTCTCCACTCTTATTCCTAACCTTGCTCTCAAATCCGCCATTACAAAATGGTGCATGAACTCAAACAATAGTCTCGTCACACCAGATTCCACCACCGTAGAAAACATCATACGCAAAATCATAGCAAAGCATAGTCCATATCAGAATCTACCTACCCAAGTTGCTACAGTTTCAGAGAAAGAATTGATTTTGGGAATTAATGAAAACCCTAATTTCAATTTCAATTTCAACCACGCTGAAACCCAAATCCCAAGTAGACCAACCCATTTGTATTCCTCATCGAATGAATCCATAGCTACAATTGCTTCAGCTTCAACTTCAACACCACCTCTTCAATTTTCAACAAAACCTAGTTGCTACTACTCTTACTCTTCAAATTCCTCTTCAGAAATTGAATCTGTCACAACACCTGAATTGGAACAAATCATGTCTAAGCTCAAAGACCCCCAAATTTTCATCATCGAAGAGGGTTTAATTTCGCTCAGAAAGATCACGAGAACGAAAGAGGAAATTAGGGTTTCTCTGTGCACCACTCAATTGCTCTCTGTTTTAAAATCTCTGATTGTTTCAAAGTATAAGAATATTCAGGTCAACGCTCTTGCTTCATTGGTCAACCTTTCATTGGAGAAATTAAACAAGGTGAAGATCGTACGGTCAGGGATTGTTCCACCGTTGATTGAAGTTTTGAGGCTCGGATCCACTGAGTCGCAGGAACACGCTTCTGGTGCACTCTTTAGTTTGGCTATAGAAGATGATAACAAAACCGCGATTGGTGTTCTTGGTGGTTTGCAACCATTGCTTCACGCGCTTGGTTCCGAGAGTGAGCGCACGCGCCATGATGCAGCGTTGGCACTTTATCATTTGTCCATGGTTCAGAGTAACCGGTCTAAGATGGTTAAGTTTGGTTCGGTTCCGACTTTATTAGGGATGGTTAAGGCGGGTCATATGATTGGTCAAGTTTTGTTGATTTTGTGTAATTTGGGATATGGGTCGGACGGGCGGGCCACAATGTTGGATGCGGGTGTTGTCGAGTGTTTGGTTGGGTTGTTGGGTGGGACCGAGTTGGGGACTAGGTCGACACAAGATAGTTGTGTTAGTGTGATGTATGCGTTGAGTCATGGTGGATTGCGATTTAAGGCATTGGCAAAGGATGCTGGGGTTGTGGAGGTCTTACAAAAGGTGGAGAAGGTCGGGAGCGAGAGGGCGCAAGAGAAGGCGAGGCGGATATTGGAGATGTTGAGAGTGAAGGAGGATGAGGATGAGGATGTGGATTGGGATGCCCTTCTTGAATCAGGGTTGGGTTGTCGAACTCGCAGCCGACAAGGCAGCGAGTTGGATGACTCCGTTGCTAACTCATCTTAG 1677 0.4359 MGEIQQTLKLLVHRKITHNNKNKKPEPITPRLKWKQMFFQQTPSKPNTKNKITEKPPEEFLCPITKTLMSDPVIVSSGHSFDRVTVQTCQNLNFTPHLSDGTTPDFSTLIPNLALKSAITKWCMNSNNSLVTPDSTTVENIIRKIIAKHSPYQNLPTQVATVSEKELILGINENPNFNFNFNHAETQIPSRPTHLYSSSNESIATIASASTSTPPLQFSTKPSCYYSYSSNSSSEIESVTTPELEQIMSKLKDPQIFIIEEGLISLRKITRTKEEIRVSLCTTQLLSVLKSLIVSKYKNIQVNALASLVNLSLEKLNKVKIVRSGIVPPLIEVLRLGSTESQEHASGALFSLAIEDDNKTAIGVLGGLQPLLHALGSESERTRHDAALALYHLSMVQSNRSKMVKFGSVPTLLGMVKAGHMIGQVLLILCNLGYGSDGRATMLDAGVVECLVGLLGGTELGTRSTQDSCVSVMYALSHGGLRFKALAKDAGVVEVLQKVEKVGSERAQEKARRILEMLRVKEDEDEDVDWDALLESGLGCRTRSRQGSELDDSVANSS* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1213 558 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 325 367 IPR000225 GO:0005515
Lan20g1213 558 Gene3D - 237 517 IPR011989 -
Lan20g1213 558 SMART arm_5 314 354 IPR000225 GO:0005515
Lan20g1213 558 SMART arm_5 435 478 IPR000225 GO:0005515
Lan20g1213 558 SMART arm_5 355 395 IPR000225 GO:0005515
Lan20g1213 558 SMART Ubox_2 59 122 IPR003613 GO:0004842|GO:0016567
Lan20g1213 558 Coils Coil 504 524 - -
Lan20g1213 558 ProSiteProfiles U-box domain profile. 55 129 IPR003613 GO:0004842|GO:0016567
Lan20g1213 558 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 32 549 - -
Lan20g1213 558 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 139 IPR013083 -
Lan20g1213 558 PANTHER U BOX DOMAIN-CONTAINING 32 549 - -
Lan20g1213 558 SUPERFAMILY ARM repeat 243 518 IPR016024 -
Lan20g1213 558 Pfam Armadillo/beta-catenin-like repeat 356 394 IPR000225 GO:0005515
Lan20g1213 558 SUPERFAMILY RING/U-box 47 128 - -
Lan20g1213 558 Pfam U-box domain 57 126 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1213 Lan-Chr20 17704448 17706578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1213 57 558 U-box Gene Family AT5G40140 53.635 1.02e-169 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1213 - - lja:Lj2g3v1020040.1 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0871 8 10473251 10475554 Lan20g1213 20 17704448 17706578 LSH