Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1208 ATGTATGGGTTTCGTGGTGAAGATTGGAAACAGAACCGGCACATGTGGCCCGTACCTTCTAACGCGACCACTGTAGTCACCGATTCTCAATTTTTATGCAAAGATGGACGTAAGATTCGAGTTGGTGATTGTGCACTTTTCAAACCACCCCAGGATTCCCCTCCTTTTGTTGGAATAATTCGTAGGTTCACATTCAACAAAGAAGAAAATCCAAGTTTTGAAGTGAATTGGCTTTACCGACCTGCTGACTTGAAGCTTGCTAAAGGGATTTTCCTGGAAGCTGCGCCAAACGAAATCTTCTACTCCTTTCACAAGGATGAAATTTCTGCTGCATCATTACTCCATCCGTGTAAAGTTGCATTCCTTCGTAAAGGTGTTGAACTTCCTTCAGGGATATCCGCATTTGTCTGTAGACGGGCGTATGACATTGTGCGCAACTGTCTATGGTGGCTAACTGATCAGGAGTACCTTAATGAAGAAATTAACCAGCTATTAGAGAAGACAAAACTAGAAATGCATGGTGTAGTGCAGTCTGGAGGCCGTTCTCCAAAACCATTGAATTGTCCGTCATCAACACAATCATTGAAATCTGGTTCTGATAGCATTCAAAGTAGTTCTTTTGGTGTACAAAGTAAGGGAAAAAAGAGAGAACGGGGTGACCAGGGATCCGATTCATCTAAAAAGGAGCGGTTATTTAAAGCAGAGGAAGGAGATTCTGGTCAATATAGATCGGAGAGCATGTTAAAATCTGAGATTGCTAAAATTACTGATAAAGGTGGGCTAGTGGACTTTGAAGGAGTTGAAAAACTGGTACAGCTCATGCAACTTGGAAGTGGTGATAAAAAAATAGATTTGGCTGGGCGAGTAATGCTGGCGAATGTTATAGCAGTTACCGACCGGTATGACTGTCTTAGCTGGTTTGTACAGCTCAAGGGTTTGCCTGTGTTGGATGAATGGCTCCAGGAGGTTCATAAGGGCAAAATTGGGGATGGTAATATGCTTAAAGAAAGCGATAAGTCTGTTGAAGATTTTTTGTTGGCTTTACTTCGTGCATTAGATAAGCTTCCTGTGAATCTCAATGCACTGCAGACCTGTAATGTTGGAAAGTCTGTTAATCATTTACGGTCTCACAAAAATGCTGAAATTCAGAGGAAAGCTAGGAGTTTAGTTGACACATGGAAGAAACGTGTCGAGGCTGAAATGAAAATGACTGATTCACAATCAGTTTCAACCCATGGCGTTTCTTGGCCAGCAAAGCCAGCATCTTCTGAGGTTTCTCAGGTTGGAAATCGGAAAACAGGAGTATCTTCTGAGAATGTTTCAAAGAGCTCTCCGGTTCAACCCTCAGTATCCAAAATTCCCCAGTCAAAGCCTAATTCTGGAGAACTATTGTCGAAGTCCTCTTCACCCCCTGGCTCAGCTAAAGGGATGTGTACCTTAGCAGGGAGTAACTCTAAAGATAGAAATATGAAAGTCTTGGTTGGAGCTGTAACGTCAGATCTACCATTGACACCGATCAAGGAGGAAAGGAGCAGCGGTTCTAGTCAGTCTCAAACCAACAGCTTATCTTGTTCTAGCGAACATGCAAAAACTATTGGTTCTTGTAGGGAAGATGCAAGGAGTTCCAGTGCTGTGTCAATGAGTGCAGGTAAAATTCACGGTGGTGTGTCTCGAAATCGGAAATCAAGCAATGGTCTACGTGGGGCTGGTCAAGCTGTACCTCAGAAGGAGCCCAGGTCTGCAAAAAATTCAAGTAGAAATTCTCCTGCTGAAAAAGTTTCACCAACTCAAACATCCCAGGAAAAATCACCTGATCACCCCCTTGCCGATCAAGGGAATAGTCAGCGACTGATTCTCAGGTTGCCAAACAGTGGTAGAAGTCCTTCAAGGGGAGCTAGCGGGGGCACTTTTGAAGAACCTGCTATTTTGTGTGGCAAAGCTTCACCACCTGCTGACAAGAATGAGAGTCAAGATAGAAGAGTGAAAGCTAAAACTGATTGTTTGCAAACCTATGTTGCGTCAAATTTGATAAATGATGCATCTGATTCTAATGGAGCTTTGACTGGTTTTGAGGAAGGTAAGGGCTCTCCGGTTAGTGATGAGCGGTGCAGGGCTACTGAAGATAGTAATAAAGTAGCTGAATTATCGAAACCAACAAGTTCTTCATCTGGATTTGTTTCCAGATCAGGGCAGATTTATGATGCTTCCTTAAGTCCCATGAATGCATTAGTTGAAAGCTGTGTGAAATTTTCAGAAGCAAGTGTTTCTACTTCCCCTGGTGATGATGGGATGAACCTACTTGCTTCTGTGGCCGCAGGGGAAATATTTAGATCCAAAAATAATTCACCACTGGCTTCACCTGAGAGAAAGTCTCCTGCAGCAGATGAATCAAGCTCTGGCAATGATTGCAAGTCAAAACTTTATGATGGAGGAGTTGCTCGTACTCTTTCAAAATCTGATGGAGGAGCAACTGGAGAGCATCATCTGGAGACTGTTGACCCACTGCAATTCAAGAATGATTCAAGGCATCCTGTTACGACAGTGTCGTGCGAGGGTTCTGGAGTTGTTGAAGCAGTGTCGTCCAGTTGTGTTGAAAACACTGGTGATGGCATAACCCAAAAAATTATCTCAGACGTGTTGCAGAAAGCTGAAGGTCTATACCCATTGCAATTCAAGAATGATTCAAGGCATCCTCTCACGACGGTGTCTCGTGATGGTGATGGTGAATCAGTCTCATCCAGTTGTGTTGAAAAAGGTGGTGATGGCAGAACTCGAATGAGATTCTCAGATTTGTTGCAGAAAGCTGACGGTCCATGCTTACTACCTGAACCCAAAGAGGGTGTTTCCGAAACTTCAGTGGCAGCTATAAAGGAGGCTGATGTGGAGCCTGGAGGAGCAAACCATTTAAATGACCAGAAGGATTTGGGAATTCAATGGGCTAAAGGCAGTAGTTCAGATCCTAAATTAAAGTCAAGAAATTCCTCTTTTGATGAAGATAAGAAGTTTGATCACTTGGATGAGAGAATCACAGAGCATGAGAAAATATCAGTTTCAAAGGAGGTCCTTTCGAGTGTAAATATTGAAAAAAAGGAAGTAGATAAAAATTTGCCTGAGTTATCATCAGATGTTGGTAATGAGAACCAGATTATTGCTGAGAAAGTGTCAGGTACTGATATCACAGTGCAAAAGCCCTCTCCAGTTGCAGAAAACTGTGAGCCCATAGATCTGAAAAAGGAGGATGTTATGCTACCTACTGCTGCTGGTAATGCTTTGATGGTATCCAGTGATGAAAATGCCGATGACATGAAGGCAGGTGAGATAGAGCCTGATAAAAAACCAATGGGTCAGGACTCTACAGTTTCAGCTGGTATTAATGGATACATTGAAGAGAGTTTGGGTACAAAGGAGGTCCTTGGTCACTGTTCTGGCGTATCAGGTCATGCCATGTTGCCAGTAATTCCTAGGAAAGAGATTGATGTCCCCAAAACATCAGAGTGTAACTTAGATGGGATTGAATATGTGGCTGCTCTAGAACGGCATGTATCCAGTGTTAATCCATCCCTTACAGATTCTGGGTCTGATACTGCAGTGAAACTGGACTTTGATTTAAATGAGGGGTTTCCTGTGGATGATGTGAGCCAAGGGGATATTGTTAGACAGGAAGAACCTGCTACTTTATCTGCTGTTCATGTTCCGTGTGCATTGCCTTTTCCTATGTCTTCCATGTCTGGGAGCTTGTATGCTTCAATTACAGCAGCATCTGCTGCCAAGGGACCTGTTGTTCCACCAGAAAGCCCAATGCGGAATAAAGGGGAACTCGGATGGAAGGGTTCGGCAGCTACAAGTGCATTCCGGCCGGCTGAACCTAGGAAAATTGCAGAGGCACCATCAAATACCACTGATATTCCTTCTGTTGATGCCACTCCTATCAAACAAGTCCGCCCTCTTTTAGATTTTGATTTAAATGTGGCCGATGAACTCAGTTTTGAGGATGTAGCTTCCCATGGTTCTTTAGAATCTGGGCCACATGATCGTAGTAGCACAGTGGGATTTGATCTTGATTTAAATAGAGTTGATGAGACTCCGGAATCTGGGTCTTTCTCTATCAGCAGACTGAATATTCCTTCGTTACCAAGTAAGCCTTCATTGTCAGGTGGGATATCTAATGGTGGCAGTGTCTCAAGAGACTTTGATTTAAATAATGGACCGGGCCTTGATGAAGTGGGCACTGAAGTCCCAGCTCGTAGTCAACAGATGAAAAGTACCATAACATTTCCTTCTGCTGTTCATGGCGCAAGAGCAAATAATCCCGAATTTGGTAATTATTCTTCATGGTTTCCTCCAGGCAATTCTTATTCAGCAATTACTGTCCCACCTCTTTTGCCTGGCAGAGGGGAGCAGAGTTATGTTGCTGGTGCACAGCGAATCATGTTTCCTACAGGTAGCACACCGTTTGGTACTGAGTTCTACAAAGGGCCCGTGCTTTCATCCTCGCCTGCTGTTGCTTATCCACCTACTACACCCTTTCCTTATCCAGGATTTCCATTTGAAACCAATTTCCCACTATCTTCAAACTCCTTTTCTGGTTCAACAGCATATATGGATTCATCAACGTTGGGTGGACTTTGCTTCCCTACCATGCCATTGCAGCCTGTTGGGCCAGGTGGTGTTGTCTCATCCACATATCCCCGTCCATACGTTATGAGTCTCCCAGGTGGTACAAGTAATGTGATTCCTGATAGCAGAAAATGGGGAAGTCAAAGTCTGGATCTTAATTCAGGCCCTGGCAGTGGTGCAGACACAGAAGGGAGAGACGATAGATTGCCTTCTGGATTGAGGCAAATTCCTGCCCCCAATTCACAAGCTTTGATGGAGGAACACATGAAGATGTTTCAAGTGGCAGGTGTACTGAAGAGAAAGGAACCTGATGGTGGTTGGGATGGAGCTGATAGACTCAGCTACAAACAGCCCTCCTGGCAGTAG 4983 0.4391 MYGFRGEDWKQNRHMWPVPSNATTVVTDSQFLCKDGRKIRVGDCALFKPPQDSPPFVGIIRRFTFNKEENPSFEVNWLYRPADLKLAKGIFLEAAPNEIFYSFHKDEISAASLLHPCKVAFLRKGVELPSGISAFVCRRAYDIVRNCLWWLTDQEYLNEEINQLLEKTKLEMHGVVQSGGRSPKPLNCPSSTQSLKSGSDSIQSSSFGVQSKGKKRERGDQGSDSSKKERLFKAEEGDSGQYRSESMLKSEIAKITDKGGLVDFEGVEKLVQLMQLGSGDKKIDLAGRVMLANVIAVTDRYDCLSWFVQLKGLPVLDEWLQEVHKGKIGDGNMLKESDKSVEDFLLALLRALDKLPVNLNALQTCNVGKSVNHLRSHKNAEIQRKARSLVDTWKKRVEAEMKMTDSQSVSTHGVSWPAKPASSEVSQVGNRKTGVSSENVSKSSPVQPSVSKIPQSKPNSGELLSKSSSPPGSAKGMCTLAGSNSKDRNMKVLVGAVTSDLPLTPIKEERSSGSSQSQTNSLSCSSEHAKTIGSCREDARSSSAVSMSAGKIHGGVSRNRKSSNGLRGAGQAVPQKEPRSAKNSSRNSPAEKVSPTQTSQEKSPDHPLADQGNSQRLILRLPNSGRSPSRGASGGTFEEPAILCGKASPPADKNESQDRRVKAKTDCLQTYVASNLINDASDSNGALTGFEEGKGSPVSDERCRATEDSNKVAELSKPTSSSSGFVSRSGQIYDASLSPMNALVESCVKFSEASVSTSPGDDGMNLLASVAAGEIFRSKNNSPLASPERKSPAADESSSGNDCKSKLYDGGVARTLSKSDGGATGEHHLETVDPLQFKNDSRHPVTTVSCEGSGVVEAVSSSCVENTGDGITQKIISDVLQKAEGLYPLQFKNDSRHPLTTVSRDGDGESVSSSCVEKGGDGRTRMRFSDLLQKADGPCLLPEPKEGVSETSVAAIKEADVEPGGANHLNDQKDLGIQWAKGSSSDPKLKSRNSSFDEDKKFDHLDERITEHEKISVSKEVLSSVNIEKKEVDKNLPELSSDVGNENQIIAEKVSGTDITVQKPSPVAENCEPIDLKKEDVMLPTAAGNALMVSSDENADDMKAGEIEPDKKPMGQDSTVSAGINGYIEESLGTKEVLGHCSGVSGHAMLPVIPRKEIDVPKTSECNLDGIEYVAALERHVSSVNPSLTDSGSDTAVKLDFDLNEGFPVDDVSQGDIVRQEEPATLSAVHVPCALPFPMSSMSGSLYASITAASAAKGPVVPPESPMRNKGELGWKGSAATSAFRPAEPRKIAEAPSNTTDIPSVDATPIKQVRPLLDFDLNVADELSFEDVASHGSLESGPHDRSSTVGFDLDLNRVDETPESGSFSISRLNIPSLPSKPSLSGGISNGGSVSRDFDLNNGPGLDEVGTEVPARSQQMKSTITFPSAVHGARANNPEFGNYSSWFPPGNSYSAITVPPLLPGRGEQSYVAGAQRIMFPTGSTPFGTEFYKGPVLSSSPAVAYPPTTPFPYPGFPFETNFPLSSNSFSGSTAYMDSSTLGGLCFPTMPLQPVGPGGVVSSTYPRPYVMSLPGGTSNVIPDSRKWGSQSLDLNSGPGSGADTEGRDDRLPSGLRQIPAPNSQALMEEHMKMFQVAGVLKRKEPDGGWDGADRLSYKQPSWQ* 1661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1208 1660 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 302 406 IPR035441 -
Lan20g1208 1660 MobiDBLite consensus disorder prediction 577 631 - -
Lan20g1208 1660 MobiDBLite consensus disorder prediction 779 804 - -
Lan20g1208 1660 MobiDBLite consensus disorder prediction 508 548 - -
Lan20g1208 1660 MobiDBLite consensus disorder prediction 1257 1305 - -
Lan20g1208 1660 MobiDBLite consensus disorder prediction 901 921 - -
Lan20g1208 1660 ProSiteProfiles TFIIS N-terminal domain profile. 314 400 IPR017923 -
Lan20g1208 1660 MobiDBLite consensus disorder prediction 503 661 - -
Lan20g1208 1660 MobiDBLite consensus disorder prediction 1580 1595 - -
Lan20g1208 1660 Pfam TFIIS helical bundle-like domain 348 397 IPR017923 -
Lan20g1208 1660 SMART TFS2_5 320 399 IPR003617 GO:0005634
Lan20g1208 1660 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 268 401 IPR035441 -
Lan20g1208 1660 Gene3D - 25 257 IPR043151 -
Lan20g1208 1660 MobiDBLite consensus disorder prediction 176 243 - -
Lan20g1208 1660 MobiDBLite consensus disorder prediction 712 727 - -
Lan20g1208 1660 Pfam BAH domain 38 142 IPR001025 GO:0003682
Lan20g1208 1660 PANTHER BAH DOMAIN-CONTAINING PROTEIN 1 880 - -
Lan20g1208 1660 PANTHER BAH DOMAIN-CONTAINING PROTEIN 889 1660 - -
Lan20g1208 1660 MobiDBLite consensus disorder prediction 183 210 - -
Lan20g1208 1660 MobiDBLite consensus disorder prediction 695 711 - -
Lan20g1208 1660 CDD TFIIS_I 322 398 - -
Lan20g1208 1660 ProSiteProfiles BAH domain profile. 37 152 IPR001025 GO:0003682
Lan20g1208 1660 MobiDBLite consensus disorder prediction 687 727 - -
Lan20g1208 1660 MobiDBLite consensus disorder prediction 211 242 - -
Lan20g1208 1660 SMART BAH_4 37 152 IPR001025 GO:0003682
Lan20g1208 1660 MobiDBLite consensus disorder prediction 402 483 - -
Lan20g1208 1660 MobiDBLite consensus disorder prediction 1580 1612 - -
Lan20g1208 1660 MobiDBLite consensus disorder prediction 1640 1660 - -
Lan20g1208 1660 MobiDBLite consensus disorder prediction 403 483 - -
Lan20g1208 1660 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 889 1660 - -
Lan20g1208 1660 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 880 - -
Lan20g1208 1660 MobiDBLite consensus disorder prediction 779 806 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1208 Lan-Chr20 17597182 17604772 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lan20g1208 BAH 2.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1208 - - lang:109335858 3207.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0054 5 668389 678035 Lan20g1208 20 17597182 17604772 LSH
Lan8g0865 8 10416345 10422824 Lan20g1208 20 17597182 17604772 LSH