Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1195 ATGATCATGGAACTCACCCATTCCGATTCTCACCCCGCTTTTGAAATCGACCTCAACGAGATCCCGTCCTCTTCTACTTCCCTACACGAAACCATTCAAATCGTTCGCGCTTATCACCAAAACCCTGTTCTACCGCCAGAACCCGCGGCGGTTATACCGCGAGGGTTAACCGTCTGCGCCGCGTGCGGCAAGAACGGGTGCAGTGGGGTCCACGCCATTGTATGTGATGGGTGTGAGCGTGGATTTCATGTTTCTTGCGTTGGAGTTCGCGGTGGATGCCGCATCGTGGAGTGGTTGTGTGATGAGTGTGTTGCCGGCGGAGTGAAGAGTAAGCTTTGGCCGTTGGGGGTTAAGTCTAAGAAGTTACTTGATATCAATGCTTCACCGCCCAGTGATGTTGATTGTGAAGAGTTGCAGGATTTGAGAAAGCACACTGTGGGTGATAATTCTTTTGGTGCCAATCCATTTGGTGCCCCGGTTGCATATTCAAATTTACACAACGGGAGTGCTCTTGGATTTCAAAAGGCATCAGGAGTCGTGACACATGCTGTTAGAGTGGGTTTTGAGGATATAATAAATCATACACAATCATTTAGTAGAAGCTTTGAGGAGGGTCTTAGAGATTTTATATCTGAAAGGCGTGGCGTGCTAGAGGATGGTTGGGGAGTGGAATTTAGACAATCAGTGATCACCTCTGAAGTATATGCAGTTTACCGTGCACCAGATGGGAAGGTATTTGATTCTTTATATGAAGTAGCTTGTTATTTGGGGCTAACATCTGGCTACAATTCTATGGAACCCGAAATAAGAAATGAGAGGTCAGGTGGACCTCAACCATCCAGAAAAAGAAAATCAACAAAAACGGCAGTAGCTAATGCTTATGTAGAAAAGTGGGGAACCTTGATCAGTAGTTATTGTAAGGATCCTCCTTCTGATGGGTTAAATGTTGATTGTGCTGCTATTGGTGGTTATATCCAACAAGCTACTGAAGCTGAAATTAGAAGAAAAGATGATGGTCACTCTTGCCCTGAGCAATTTTCTGATGGACTTCCTCTACAGTTCAAGGACTTCTTTGTTCTTTCTTTGGGAAAAGTTGATGGTAGACCTTCATATCATGATGTTAACCTTATCTACCCTGTAGGTTATAAATCTTCTTGGCATGATAAGATCACTGGTTCTATTTTTACATGTGAGGTTTTGGAGGGTGGTGAGTCGGGGCCTATATTTAGGGTCGGAAGGTGTTCTTGTTCGAAATATCCTGTTCTAGTTGGGTCAACCATCCTCTCAATGTCAAGTCTTTGTCAAAAATTTGTGAGTCAAACCAACGAAGGTGAGAGAAAGACTAATGATGAAATGGATTATGATGGTGATGGAAGTATCCAGATGATCCTTTCAGATCTTTGCGTGCCAACAGAAATTGATGTCACGAGTTGTATAGAAAGTTGCTTGAATGAAGCATGTGATACTTGTACATCAGACATACACCAGCCTGTTGCTAGTCCAGTTCAAGATAAAACTAGAAATTTGTTAGCTGATGACTCAGGGCCATTGGATGGAATTGGTGAAGTTTTGGTGGAAGAGCGGTCATCATCCTCAGCATGGGGAGTTATGTCTCAAAAATTAGTCGACACCTGCAAGGATATCTGCAAGCAGAAAGGCACTCTCAAGTTCTACTGTAAACATGTTGAAAACGAAACATGCTTACATGAATGGGATACAGTGAATGGAAATAGTCACTCACACTTTTCTTCATTGGATAAATTCTGTGCTTCAGTTTGTTCGGTCAGCATACCAGATGTAATTCATGCAGCTAATGATCTGGATAGTCTCTCTGAGGTCTTAGTAAAATGGTTGGGACATGATAGATTTGGATTAGATGTCGAATTTGTACAAGAAGTATTAGAACAGCTTCCTGGTGTCCAAGATTCTTGCCATTATGAACTTCTAAATAGTAGAATTAATCACTCTTCATTTCCGACAGTCGAAAATGGTTTTGTAGTAGTTGAACGGAGAGGTGGATCACATTATCAAGAAGAAGAAGTTCATGGTTTATATAGGAGCTCCAAGAAAGTGAGGTTGACTGAGAAATGTGTTAAGGAAGATCGTTGTCCACCACCTCCTGGGAAGCCACTTTGCTCTAGGGTTCCTAATGAACATGTTGGGGACATTTTCCAGGCTTGGGAACTTATAGAGCGCTTTCATGAAATTCTGGACCTCAAAGAACCATTGTCATTAGATGAGCTAGAGAAGGAACTTATCAACCCATGGTTTGATGGATTGGATTTTCTTCAGAAATCTGAGAGGGAAACGAATGACAGTCAAGTTTTAAATTTGGCAGGTGATGATGGTTGTTGCAGATCCCCTGAAGTTGGTCCATCAGGTTCCATAGAAAGTTCCCATGCATTTATTCAAGTTGAAACAGAAGCAATGAAAGAGGCTGCTCAAGTTAAGCTCGCATCTTTTACTTATGCCAGATGTTTTGGTGTTGCTTTGACCAAGGTACATAATTCCATGCTAAGAGTGCTTATAGGTGAGCTGCAATCAAAAGTGGCTGCTCTGGTAGATCCAAGTTTTGAACCTGAAGAGACACGAAGTAGACGGGGAAGAAGGAAAGATTTTGATAGTGCAGCTCCTGCGAAACGAACCAAGCTCAATATGCTTCCTAATAATGAATTGACTTGGCCAGAATTAGCTCGTAGATTCATCTTGGCTGTCTTAGCAATGGATGGTAACCTGGACTCTGCAGAAACTACTGCACGCGAAAGTGGAAAAGTATTTCGTTGCTTGCGAGGTGACGGTGGTTTGCTGTGTGGCTCCCTTTCTGGCGTGGCTGGGATGGAAGCAGATGCACAGTTGTTTGCAGAGGCTGAAAAGAAAATTTTTGGGTCTTTGAGCAAAGACAATAATGTACTAACCATTGAAGACGAGGAGCCTGATGTGAAGGATGCTTCTGAAAACCTTCTGGGCGGTGAAGGCAGTATTCCAGAATGGGCAAAAGAACTAGAACCTGCTAGAAAACTACCAACAAACGTTGGAACCCGTATCAGAAGGTGTGTTTACAATGCTCTGGAGAAGAATCCACCAGAGTGGGCAAAAAAAATTCTGGAGCATTCAATCAGTAAGGAAGTGTACAAGGGCAATGCATCTGGGCCAACAAAGAAAGCAGTTCTTTCAGTGTTGACTACTGTATCTGGTGGAGGATTGCCAGAGAAGCCACCCAAGAAAGGAAAGAAAACAAAGACTGAAATATCTATTTCTGATATTGTCATGAAACAATGTCGCATTGTATTACGTCGTGCAGCTGCCACAGATGATTCAAAGGTTTTTTGCAATTTGCTGGGAAGAAAGTTAATTAACTGTTCAGATAATGATGATGAGGGGTTTCTTGGATCTCCAGCTATGGTGGCCCGTCCTCTTGACTTCCGGACTATTGACCTAAGGTTGGCTGCTGGAGCTTATGGTGGATCTCATGAAGCTTTTGTTGAGGATGTTCGCGAGCTGTGGAACAATGTTCGCGTTGCTTTTGGAGATGAACCTGATTTAGTTGAACTGGCTGAAAATTTATCCCAGAACTTTGAATCGCTGTATAATGAGGAGGTTGTTACTTACGCCCAAAAATTTATGGACTATGCTAAACTGGGATGCTTAAATGCAGAGATGAGAAAAGAAGTTGACAATTTTATTGCATCAACAAGAGAGATTCCTAAGGCCCCTTGGGATGAGGGAGTGTGTAAAGTATGTGGCATTGATAGGGATGATGACAGTGTTCTACTATGTGATACTTGTGATGCTGAGTATCATACATATTGCTTACATCCTCCACTTGCAAGGATCCCCGAAGGAAACTGGTACTGCCCTTCTTGTGTTGATGATAAACTTGCAACTCAAGATGTCACAGAACATACACATACTATTTGCAAACGTCGAAGGAAAAGATTCCGTGGAGAAGTTAATTCTCTTTACTTGGAACCCCTAACTCATTTAAAAACTACAATGGAAGAAAAAGAATATTGGGAGTACACCGTGGGCGAGAGAACTTTCCTTCTCAAGTTTTTATGTGATGAGTTGCTTAACTCTTCCCTAGTACGCCAGCATCTTGAGCATTGTGCAGAGTTGTCTGTTGAGTTACAGCAGAAATTGCGTGCATTTTCTGTTGAGTGGAAAGGTCTTAAAGCTAAAGAAGACATCTTATCCACAAAAGCTGCAAAAATTGATATAGGCTCTCTTAATTCTTCTGGAGAAGTTGTTCACAAGGAAGGGTTCACAGCCACACTTGTATCTGTGGCAAACTCTGATACTGATAGCCAAGATATGAATTCCGTAGATGTTGAGGAGCAACATAGGAATATCTCTGTGGCAGTGGAGTCTCAATGTACTCATAAATCCACTAATTCTTCTCCATCATCAAATCACATGGCTAGAGAAATGAACAGTGCTGGTGGAGCAGATAATCTTATCCAGTGTAACCTCCAGAAATGTGAGGGAAGGGACATATCTACTCTTGCGACATCCAAGCAAGGACAAGGTGTGCCTGTTGATGCTCCACCTCGGATTGCTGTGTATGAAGCTGAACCTTACCATGTTGAGCTCAATGCAACCAAGCGTCAAATTTCAACACTACAGGATTCCATAACTAGTGCACAATCACAGCTACTAAAGCTCCCTGTTCGCCTGGACTTTTTGGGTACTGATAACATTGGTCGACTGTACTGGTCTTCAGCTATGCCCAGAGGACGTTCATCTATAGTTGTTGATGCAAGTGATGTGTTGCACGGGAGAGGGATGGTGGTTAACAGAGACTCTTTAGGGAAGTTTTCTTTAGTGCAGCATTCTGCACTATCTGGCAAGGACTCCTCTCCTCTAATATCTCCACCAAGTAATGCTTTGGGCTTTAGTTCACTGTGGATTGCTTATGAAACTGATGCAGAAGTCGAGGAGCTCTTATGTTGGTTGAAGGATAACGAGACCAAGGAAAAAGAACTGAAAGATTCCATCACGCAGTGGTCAAAATCAAGATTTCATGAGTTGATTAGTGCTCAGACTGATGGTCGGGTTGAGTACCAAGGACCTTTTTCTATCCCAGGAAACAGAGAGAAAATAGTCTCTAATTCTCTTGTTATGAAGGCAACGTTGTTTCTGGAAAAGAAATATGGCCCTTTCTTTGAATGGGATACCATTGAGGTGTTGATGAAGCGGAGCAAAAAGGCCAGAAACACCAATGATGAAAAAATGTACAGGTGTGAATGCTTAGAACCCATTTGGCCTTCTAGGAAACACTGCATGTCTTGCCACAAAACTTTTCTGAATAATGCTGAACTAGAGGGGCACAATGATGGCAAATGTAATGCTGGTCTTCGGGCCTTGGAGAAGAATAAAGATAATAGTGGATCTTCTAAAGGAAGAGGGAACTTGAAATGTGGTACCTCAAGTAAAAAATTCAGAGGTGAGGCTGACACAGCTGGAACCTCAACTGGTGGAGGTTCAACTTCAAAGCTTAGCTCAAGATTGATTCCATTTTCAAATGAAGGATCCCCGTGCCCATTTAATTTTGAAGATATATGTTCAAAGTTTGTAACAAATGATTTCAACAAGGAACTTGTCAGGGAGATAGGTCTTATTGGTTCAGATGGTAACCCGTCCTTTATTCCTTCCGTATCTCCTTTTGTTAGTGATTCTACAGTTATGCTATTCTCAGCTCAAAAGGATGATGAAAATGTTGATGGTGCATCCAAAGCTTCAGAAAGCCAAGTTTCTCAAGGAGGCACTGGTGGAGCTGCCATATCTGTGGGCAGGTTAGCTACAAATGAAAGCATGAAAGTAGGGAAATCCGACACATCTTTGGTAGAACAAAGAGATGGAAAGTCCTCTTTCCCTACTCATGCTTCAAATATGAGGGTTGTTGGCTGTTGTTTGGTCCCTTCATCTTCGTTGAGACCATTAGTTGGAAAGGTTTCACATATTTTGAGGCTACTTAAGATAAGTTTACTTGATATTGATGCTGCACTCCCAAAAGTTGCTCTAAAATCATCAAAGGCAGAGCTGAACAGAAGACAAACCTGGTGTGCATTCGTCAAATCTGCTAACACTATATATGAGATGGTTCAGGCAACAATCACATTTGAGGATATGATCAAGTCAGAGTACTTAAGGAATGACTGGTGGTACTGGTCATCATTCTCAGCTGCTGTTAAATCTTCTACTTTGTCTTCCCTTGCGCTTCGCTTGTACTCTCTTGATTCGGCCATTGTATATGAGAAACTGCCCAGTTCAAGTATTACTGACAGCCCTGAACCTTCTTCCATAGCGGAACCGAAACAGCAACTGATCATTGTTGAAGCAGATAAATCCAAATCATGCCGGAAGTCAAACAGGAAACGAAAGGAATCAGATGGCTGA 6396 0.4232 MIMELTHSDSHPAFEIDLNEIPSSSTSLHETIQIVRAYHQNPVLPPEPAAVIPRGLTVCAACGKNGCSGVHAIVCDGCERGFHVSCVGVRGGCRIVEWLCDECVAGGVKSKLWPLGVKSKKLLDINASPPSDVDCEELQDLRKHTVGDNSFGANPFGAPVAYSNLHNGSALGFQKASGVVTHAVRVGFEDIINHTQSFSRSFEEGLRDFISERRGVLEDGWGVEFRQSVITSEVYAVYRAPDGKVFDSLYEVACYLGLTSGYNSMEPEIRNERSGGPQPSRKRKSTKTAVANAYVEKWGTLISSYCKDPPSDGLNVDCAAIGGYIQQATEAEIRRKDDGHSCPEQFSDGLPLQFKDFFVLSLGKVDGRPSYHDVNLIYPVGYKSSWHDKITGSIFTCEVLEGGESGPIFRVGRCSCSKYPVLVGSTILSMSSLCQKFVSQTNEGERKTNDEMDYDGDGSIQMILSDLCVPTEIDVTSCIESCLNEACDTCTSDIHQPVASPVQDKTRNLLADDSGPLDGIGEVLVEERSSSSAWGVMSQKLVDTCKDICKQKGTLKFYCKHVENETCLHEWDTVNGNSHSHFSSLDKFCASVCSVSIPDVIHAANDLDSLSEVLVKWLGHDRFGLDVEFVQEVLEQLPGVQDSCHYELLNSRINHSSFPTVENGFVVVERRGGSHYQEEEVHGLYRSSKKVRLTEKCVKEDRCPPPPGKPLCSRVPNEHVGDIFQAWELIERFHEILDLKEPLSLDELEKELINPWFDGLDFLQKSERETNDSQVLNLAGDDGCCRSPEVGPSGSIESSHAFIQVETEAMKEAAQVKLASFTYARCFGVALTKVHNSMLRVLIGELQSKVAALVDPSFEPEETRSRRGRRKDFDSAAPAKRTKLNMLPNNELTWPELARRFILAVLAMDGNLDSAETTARESGKVFRCLRGDGGLLCGSLSGVAGMEADAQLFAEAEKKIFGSLSKDNNVLTIEDEEPDVKDASENLLGGEGSIPEWAKELEPARKLPTNVGTRIRRCVYNALEKNPPEWAKKILEHSISKEVYKGNASGPTKKAVLSVLTTVSGGGLPEKPPKKGKKTKTEISISDIVMKQCRIVLRRAAATDDSKVFCNLLGRKLINCSDNDDEGFLGSPAMVARPLDFRTIDLRLAAGAYGGSHEAFVEDVRELWNNVRVAFGDEPDLVELAENLSQNFESLYNEEVVTYAQKFMDYAKLGCLNAEMRKEVDNFIASTREIPKAPWDEGVCKVCGIDRDDDSVLLCDTCDAEYHTYCLHPPLARIPEGNWYCPSCVDDKLATQDVTEHTHTICKRRRKRFRGEVNSLYLEPLTHLKTTMEEKEYWEYTVGERTFLLKFLCDELLNSSLVRQHLEHCAELSVELQQKLRAFSVEWKGLKAKEDILSTKAAKIDIGSLNSSGEVVHKEGFTATLVSVANSDTDSQDMNSVDVEEQHRNISVAVESQCTHKSTNSSPSSNHMAREMNSAGGADNLIQCNLQKCEGRDISTLATSKQGQGVPVDAPPRIAVYEAEPYHVELNATKRQISTLQDSITSAQSQLLKLPVRLDFLGTDNIGRLYWSSAMPRGRSSIVVDASDVLHGRGMVVNRDSLGKFSLVQHSALSGKDSSPLISPPSNALGFSSLWIAYETDAEVEELLCWLKDNETKEKELKDSITQWSKSRFHELISAQTDGRVEYQGPFSIPGNREKIVSNSLVMKATLFLEKKYGPFFEWDTIEVLMKRSKKARNTNDEKMYRCECLEPIWPSRKHCMSCHKTFLNNAELEGHNDGKCNAGLRALEKNKDNSGSSKGRGNLKCGTSSKKFRGEADTAGTSTGGGSTSKLSSRLIPFSNEGSPCPFNFEDICSKFVTNDFNKELVREIGLIGSDGNPSFIPSVSPFVSDSTVMLFSAQKDDENVDGASKASESQVSQGGTGGAAISVGRLATNESMKVGKSDTSLVEQRDGKSSFPTHASNMRVVGCCLVPSSSLRPLVGKVSHILRLLKISLLDIDAALPKVALKSSKAELNRRQTWCAFVKSANTIYEMVQATITFEDMIKSEYLRNDWWYWSSFSAAVKSSTLSSLALRLYSLDSAIVYEKLPSSSITDSPEPSSIAEPKQQLIIVEADKSKSCRKSNRKRKESDG* 2132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1195 2131 CDD PHD1_Lid2p_like 1243 1288 - -
Lan20g1195 2131 SUPERFAMILY FYVE/PHD zinc finger 56 110 IPR011011 -
Lan20g1195 2131 Gene3D - 1083 1208 IPR036427 GO:0005515
Lan20g1195 2131 Pfam Bromodomain 1132 1186 IPR001487 GO:0005515
Lan20g1195 2131 Gene3D - 350 465 - -
Lan20g1195 2131 Pfam PHD-finger 1243 1289 IPR019787 -
Lan20g1195 2131 ProSiteProfiles Zinc finger PHD-type profile. 1241 1291 IPR019787 -
Lan20g1195 2131 MobiDBLite consensus disorder prediction 1815 1831 - -
Lan20g1195 2131 MobiDBLite consensus disorder prediction 266 286 - -
Lan20g1195 2131 Pfam Methyl-CpG binding domain 208 263 IPR001739 GO:0003677
Lan20g1195 2131 MobiDBLite consensus disorder prediction 1792 1831 - -
Lan20g1195 2131 CDD PHD_SF 58 103 - -
Lan20g1195 2131 SMART bromo_6 1103 1201 IPR001487 GO:0005515
Lan20g1195 2131 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1243 1290 IPR013083 -
Lan20g1195 2131 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 111 IPR013083 -
Lan20g1195 2131 PANTHER OS02G0192300 PROTEIN 13 2131 - -
Lan20g1195 2131 ProSiteProfiles Zinc finger PHD-type profile. 56 106 IPR019787 -
Lan20g1195 2131 SUPERFAMILY FYVE/PHD zinc finger 1232 1291 IPR011011 -
Lan20g1195 2131 MobiDBLite consensus disorder prediction 859 877 - -
Lan20g1195 2131 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9 13 2131 - -
Lan20g1195 2131 SMART PHD_3 1243 1289 IPR001965 -
Lan20g1195 2131 SMART PHD_3 58 104 IPR001965 -
Lan20g1195 2131 ProSitePatterns Zinc finger PHD-type signature. 59 103 IPR019786 -
Lan20g1195 2131 ProSiteProfiles Bromodomain profile. 1134 1182 IPR001487 GO:0005515
Lan20g1195 2131 SUPERFAMILY Bromodomain 1079 1198 IPR036427 GO:0005515
Lan20g1195 2131 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1330 1367 IPR028942 -
Lan20g1195 2131 ProSitePatterns Zinc finger PHD-type signature. 1244 1288 IPR019786 -
Lan20g1195 2131 MobiDBLite consensus disorder prediction 1905 1924 - -
Lan20g1195 2131 Coils Coil 1530 1550 - -
Lan20g1195 2131 MobiDBLite consensus disorder prediction 858 877 - -
Lan20g1195 2131 ProSiteProfiles FYR domain FYRN motif profile. 349 402 IPR003888 GO:0005634
Lan20g1195 2131 ProSiteProfiles FYR domain FYRC motif profile. 575 650 IPR003889 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1195 Lan-Chr20 17336297 17350728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1195 16 2131 C2H2 Transcription Factor Family AT3G01460 43.767 0.0 1648
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan20g1195 MBD 1.8e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1195 K22768 - gmx:100820223 2824.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0051 5 580357 597107 Lan20g1195 20 17336297 17350728 LSH
Lan8g0858 8 10354666 10367676 Lan20g1195 20 17336297 17350728 LSH