Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1194 ATGGATTCTGGGCATCTTTTCTTCAACACCGCGTGTCGCGGGAACAACATGATCTTCCTTGGCAATGGTGATCTTTCTTTTCAAGGAAGATCGATGATGAGCATGGAGGAAAGCTCAAAGAGAAGACCTTTCTTCAGCTCACCAGACGAATTGTTTGATGATGAGTATTATGAGGAGCTGTTGCCAGAGAAAAAGCGCCGCCTCACTTCCGAGCAGGTTCATCTGTTGGAGAAAAACTTTGAGGAAGAGAACAAACTGGAGCCAGAGAGGAAGACTCAGTTGGCAAAGAAGCTGGGGTTGCAGCCGAGGCAGGTGGCTGTGTGGTTCCAGAACCGCAGAGCTCGATGGAAGACCAAGCAACTCGAAAGGGATTATGATGTTCTCAAGGCTTCCTATGATTCCCTACTTTCATCTTATGATTCCATTGTGAAGGACAATGAGAAGCTTAAATCTGAGGTGTTATCCTTACATGAGAAGCTTCAAGTTGAAGCTAAAGAGATTGAAAGGGAAGAACCAATATCAGACAAAAAAGCTGAGACAGTGGCATTAGATATAGCTCAAATCACTGGCAGTGTCAGCAGTGGAATAGTGGATGAGGGTAGTCCTCAGATTGTTGTTGACAGTGTTGATTCATATTTTCCAGCTGAGAATTATGTAATGGAACCAATTGAAAGGGTTCAATCTGAGGAAGATGATGGAAGTGATGATGGTACAAGTTACTTCTCAGATGTTTTTGTGGCACATGAAAATGAACAACAAAACAATGAGGCATTGGGTTGGTGGAGTAATATGTTGCATAATGGACCACAAGTGCTTTTTTAA 822 0.4307 MDSGHLFFNTACRGNNMIFLGNGDLSFQGRSMMSMEESSKRRPFFSSPDELFDDEYYEELLPEKKRRLTSEQVHLLEKNFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDSLLSSYDSIVKDNEKLKSEVLSLHEKLQVEAKEIEREEPISDKKAETVALDIAQITGSVSSGIVDEGSPQIVVDSVDSYFPAENYVMEPIERVQSEEDDGSDDGTSYFSDVFVAHENEQQNNEALGWWSNMLHNGPQVLF* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1194 273 CDD homeodomain 64 120 IPR001356 GO:0003677
Lan20g1194 273 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 248 IPR045224 GO:0003700
Lan20g1194 273 PRINTS Lambda-repressor HTH signature 90 99 IPR000047 GO:0003677
Lan20g1194 273 PRINTS Lambda-repressor HTH signature 99 115 IPR000047 GO:0003677
Lan20g1194 273 Coils Coil 150 170 - -
Lan20g1194 273 Pfam Homeodomain 64 117 IPR001356 GO:0003677
Lan20g1194 273 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 1 248 - -
Lan20g1194 273 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Lan20g1194 273 Gene3D - 59 126 - -
Lan20g1194 273 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Lan20g1194 273 Pfam Homeobox associated leucine zipper 119 161 IPR003106 GO:0006355|GO:0043565
Lan20g1194 273 SMART HOX_1 62 123 IPR001356 GO:0003677
Lan20g1194 273 SUPERFAMILY Homeodomain-like 62 121 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1194 Lan-Chr20 17331905 17334968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1194 1 261 Homeobox Transcription Factor Family AT3G01470 56.318 6.16e-89 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lan20g1194 Homeodomain 7.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1194 K09338 - gmx:100797836 342.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0050 5 576323 579692 Lan20g1194 20 17331905 17334968 LSH