Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lan20g1194 | ATGGATTCTGGGCATCTTTTCTTCAACACCGCGTGTCGCGGGAACAACATGATCTTCCTTGGCAATGGTGATCTTTCTTTTCAAGGAAGATCGATGATGAGCATGGAGGAAAGCTCAAAGAGAAGACCTTTCTTCAGCTCACCAGACGAATTGTTTGATGATGAGTATTATGAGGAGCTGTTGCCAGAGAAAAAGCGCCGCCTCACTTCCGAGCAGGTTCATCTGTTGGAGAAAAACTTTGAGGAAGAGAACAAACTGGAGCCAGAGAGGAAGACTCAGTTGGCAAAGAAGCTGGGGTTGCAGCCGAGGCAGGTGGCTGTGTGGTTCCAGAACCGCAGAGCTCGATGGAAGACCAAGCAACTCGAAAGGGATTATGATGTTCTCAAGGCTTCCTATGATTCCCTACTTTCATCTTATGATTCCATTGTGAAGGACAATGAGAAGCTTAAATCTGAGGTGTTATCCTTACATGAGAAGCTTCAAGTTGAAGCTAAAGAGATTGAAAGGGAAGAACCAATATCAGACAAAAAAGCTGAGACAGTGGCATTAGATATAGCTCAAATCACTGGCAGTGTCAGCAGTGGAATAGTGGATGAGGGTAGTCCTCAGATTGTTGTTGACAGTGTTGATTCATATTTTCCAGCTGAGAATTATGTAATGGAACCAATTGAAAGGGTTCAATCTGAGGAAGATGATGGAAGTGATGATGGTACAAGTTACTTCTCAGATGTTTTTGTGGCACATGAAAATGAACAACAAAACAATGAGGCATTGGGTTGGTGGAGTAATATGTTGCATAATGGACCACAAGTGCTTTTTTAA | 822 | 0.4307 | MDSGHLFFNTACRGNNMIFLGNGDLSFQGRSMMSMEESSKRRPFFSSPDELFDDEYYEELLPEKKRRLTSEQVHLLEKNFEEENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDVLKASYDSLLSSYDSIVKDNEKLKSEVLSLHEKLQVEAKEIEREEPISDKKAETVALDIAQITGSVSSGIVDEGSPQIVVDSVDSYFPAENYVMEPIERVQSEEDDGSDDGTSYFSDVFVAHENEQQNNEALGWWSNMLHNGPQVLF* | 274 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lan20g1194 | 273 | CDD | homeodomain | 64 | 120 | IPR001356 | GO:0003677 | |
Lan20g1194 | 273 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 1 | 248 | IPR045224 | GO:0003700 | |
Lan20g1194 | 273 | PRINTS | Lambda-repressor HTH signature | 90 | 99 | IPR000047 | GO:0003677 | |
Lan20g1194 | 273 | PRINTS | Lambda-repressor HTH signature | 99 | 115 | IPR000047 | GO:0003677 | |
Lan20g1194 | 273 | Coils | Coil | 150 | 170 | - | - | |
Lan20g1194 | 273 | Pfam | Homeodomain | 64 | 117 | IPR001356 | GO:0003677 | |
Lan20g1194 | 273 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT5 | 1 | 248 | - | - | |
Lan20g1194 | 273 | ProSitePatterns | 'Homeobox' domain signature. | 94 | 117 | IPR017970 | GO:0000981|GO:0006355 | |
Lan20g1194 | 273 | Gene3D | - | 59 | 126 | - | - | |
Lan20g1194 | 273 | ProSiteProfiles | 'Homeobox' domain profile. | 59 | 119 | IPR001356 | GO:0003677 | |
Lan20g1194 | 273 | Pfam | Homeobox associated leucine zipper | 119 | 161 | IPR003106 | GO:0006355|GO:0043565 | |
Lan20g1194 | 273 | SMART | HOX_1 | 62 | 123 | IPR001356 | GO:0003677 | |
Lan20g1194 | 273 | SUPERFAMILY | Homeodomain-like | 62 | 121 | IPR009057 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lan20g1194 | Lan-Chr20 | 17331905 | 17334968 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lan20g1194 | 1 | 261 | Homeobox Transcription Factor Family | AT3G01470 | 56.318 | 6.16e-89 | 263 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HB-HD-ZIP | Lan20g1194 | Homeodomain | 7.9e-18 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lan20g1194 | K09338 | - | gmx:100797836 | 342.428 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lan5g0050 | 5 | 576323 | 579692 | Lan20g1194 | 20 | 17331905 | 17334968 | LSH |