Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1191 ATGTCTAACTCAATCCCCAGCTCCAGTAACCCAATCCCTAGCTCTAGTAACCCAATCCCAAGCTCTGGTGACCTAATCCCTAACTCTAGTAACCCAAAGAAGAACAACGGTCGTAGAAGGATTGAGATGAAAATGATACCCAAAGACAGCAACCTACAAGTCACATTCTCCAAACTCCGCACTGGGCTATTCAAGAAAGCGAGCGAGCTTTGCACTCTTTGTGATGCAAAAGTTGGGCTAGTTGTCTTTTCTCCTGCAAAGAAGGCTTTCTCCTTTGGCGACCCTAGTATTGATGCTGTCATAGACCGCTATCAAATGAGGGACCAACCACTGAACCTGGTGAACATGCAATATCTTGAGGCTCACAAAAATGCTAATGTTCAGGAGCTTAATGATAAGATTAATCGGATCAATGAAGATCTTGAGAATGAGAAGAAGTGCAAGATCAATGGAGAACGAGTTGATCAATTGAAGTCGGCTCTTGAGAATCTAAAGAAGAATGTGCTTGGTGTTGTTGAAAGGCAGAATATTGTCGAGGCTGCTGCTACTATTGCTGCTGCTATATCACATCCTCTTCACTTTTTTACAGGTGGTGCATCTTCTTCAAACAACCCTTTGCCACCACCACCTCAGCCACCAACTCAGGAGTTTCAGGTGCAGCCGCCACCGCCACCTCAACAATATCCTGTGAATCCACAACAACCACCTCAACAGTTTAGGCATCCACAACCACCACCTCAGCAGTTTATGCAGCCACAACCACTACCTCTGCAGTTTCCGATTTATCCACCACCACCACCATATATGCTTCAGAACCAGTCCATGATGCTGCCAAATAATTTGTTCAATGGTGGCATGAATGGCATGATGAATCAGCATGCCTTCAATAATAATAATATGGGAGGATATGGACCTACATATGGATTCTTTTGA 933 0.4437 MSNSIPSSSNPIPSSSNPIPSSGDLIPNSSNPKKNNGRRRIEMKMIPKDSNLQVTFSKLRTGLFKKASELCTLCDAKVGLVVFSPAKKAFSFGDPSIDAVIDRYQMRDQPLNLVNMQYLEAHKNANVQELNDKINRINEDLENEKKCKINGERVDQLKSALENLKKNVLGVVERQNIVEAAATIAAAISHPLHFFTGGASSSNNPLPPPPQPPTQEFQVQPPPPPQQYPVNPQQPPQQFRHPQPPPQQFMQPQPLPLQFPIYPPPPPYMLQNQSMMLPNNLFNGGMNGMMNQHAFNNNNMGGYGPTYGFF* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1191 310 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 46 92 IPR002100 GO:0003677|GO:0046983
Lan20g1191 310 ProSiteProfiles MADS-box domain profile. 36 96 IPR002100 GO:0003677|GO:0046983
Lan20g1191 310 CDD MADS_MEF2_like 37 105 IPR033896 GO:0000977|GO:0045944
Lan20g1191 310 Gene3D - 49 118 IPR036879 GO:0003677|GO:0046983
Lan20g1191 310 MobiDBLite consensus disorder prediction 198 253 - -
Lan20g1191 310 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 36 159 - -
Lan20g1191 310 PRINTS MADS domain signature 38 58 IPR002100 GO:0003677|GO:0046983
Lan20g1191 310 PRINTS MADS domain signature 58 73 IPR002100 GO:0003677|GO:0046983
Lan20g1191 310 PRINTS MADS domain signature 73 94 IPR002100 GO:0003677|GO:0046983
Lan20g1191 310 PANTHER MADS BOX PROTEIN 36 159 - -
Lan20g1191 310 MobiDBLite consensus disorder prediction 203 253 - -
Lan20g1191 310 SUPERFAMILY SRF-like 37 108 IPR036879 GO:0003677|GO:0046983
Lan20g1191 310 SMART madsneu2 36 95 IPR002100 GO:0003677|GO:0046983
Lan20g1191 310 Coils Coil 120 174 - -
Lan20g1191 310 MobiDBLite consensus disorder prediction 1 39 - -
Lan20g1191 310 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1191 Lan-Chr20 17080288 17081286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1191 33 165 Type I MADS-box Gene Family AT5G60440 50.735 1.01e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan20g1191 SRF-TF 1.2e-20 No_clan