Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1190 ATGTCTAACCCAATCCCTAGCTCTACTAGTAACCCAAAGAAGAACAAGGGCCGTAGAAGGATTGAGATGAAAATGATAGCCAAAGACAACAACCTACAAGTCACATTCTCCAAACGCTGCACTGGGCTATTCAAGAAAGTAAGTGAGCTTTGCACTCTTTGTGATGCAAAAGTTGGGCTAGTTGTCTTTTCTCTGCCAAACAAGGCTTTCTCCTTTGGCGACCCTAGTATTGATGTTGTCATAGACCGCTATCAAATGAGGGACCAACCACTGAACCTGGGGAACATGCAATATCTTGAGGCTCACATAAATGCTAATGTTCATGAGCTTAATGATAAGATTAATCGGATCAATGAAGATCTTGAGATTGAGAAGAAGTGTAGTGAAGAGTTGGCTAAGAAAAGGGAAGAGGTACAAGAATGTTTATGGTGGGCTGCTCCAATTGAAGAGATCAATGGAGAACGAGTTGATCAATTAAAGTCGACTCTTGTGAATCTGAAGAAGAATGTACTTGGTGTTGATGAAAGGCAGAATATTGTTGAGAGTGCTGCTACTGTTGCTGCTGCTATCCCACCACCTCCTCACTTTTTTATAGGTGGTGCATCTTCTTCAAACAACCCTTTGCCACCACCACCTCAGCCACCAACTCAGGAGTCTCAGGTGCAGCTGCCACCGCTACCTCAGCAGTTTCCTGTGAATCCACAACCACCACCTCAGCAGTTTATGCATCCACAACCACCACCTCAGCAGTTTATGCATCCACAACCACCACCTCAGCAGTTTATGCAGCCACAACCACTACCTCAGCATTTTCCGATGTATCCACCACCACCACCACATATGCTTCAGAATTAG 855 0.4468 MSNPIPSSTSNPKKNKGRRRIEMKMIAKDNNLQVTFSKRCTGLFKKVSELCTLCDAKVGLVVFSLPNKAFSFGDPSIDVVIDRYQMRDQPLNLGNMQYLEAHINANVHELNDKINRINEDLEIEKKCSEELAKKREEVQECLWWAAPIEEINGERVDQLKSTLVNLKKNVLGVDERQNIVESAATVAAAIPPPPHFFIGGASSSNNPLPPPPQPPTQESQVQLPPLPQQFPVNPQPPPQQFMHPQPPPQQFMHPQPPPQQFMQPQPLPQHFPMYPPPPPHMLQN* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1190 284 MobiDBLite consensus disorder prediction 205 284 - -
Lan20g1190 284 MobiDBLite consensus disorder prediction 196 284 - -
Lan20g1190 284 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Lan20g1190 284 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 16 175 - -
Lan20g1190 284 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 72 IPR002100 GO:0003677|GO:0046983
Lan20g1190 284 SUPERFAMILY SRF-like 17 87 IPR036879 GO:0003677|GO:0046983
Lan20g1190 284 PANTHER MADS BOX PROTEIN 16 175 - -
Lan20g1190 284 Coils Coil 111 131 - -
Lan20g1190 284 Gene3D - 96 189 - -
Lan20g1190 284 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Lan20g1190 284 Gene3D - 29 95 IPR036879 GO:0003677|GO:0046983
Lan20g1190 284 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Lan20g1190 284 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Lan20g1190 284 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1190 Lan-Chr20 17034785 17035639 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1190 13 207 Type I MADS-box Gene Family AT5G60440 44.724 5.51e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan20g1190 SRF-TF 3.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1190 - - lang:109335512 411.764