Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1188 ATGGAACATGTTTTGGAAAAAAGATTTCCTCTCCATGCCAAAGATTATGAGTTATATGAAGAAGTAGGTGAAGGAGTTAGCGCCTCGGTATACAGGGCCCTCTGTATTCCTCTCAATGTGATAGTTGCCATCAAGGTTCTCGATCTCGAGAAGTGCAATAACGATCTGGATGGCATTAGGAGAGAGGTGCACACCATGAGCTTGATTGGTCATCCAAATCTTTTACAGGCACATTGCTCTTTTACTGCTGGACACAACCTTTGGGTTGTGATGCCATACATGGCTGGTGGGTCTTGCCTTCACATAATCAAAACTTCTTATCCTGAGGGCTTTGACGAACCTGTTATTGCTACTTTATTGCATGAGGTTCTCAAAGCTCTTGTCTATCTTCATGCCCATGGTCACATACATAGAGATATTAAGGCTGGGAATATTTTACTTGATTCTAATGGTTCAGTCAAAGTAGCTGACTTTGGGGTGTCAGCAAGTATGTTTGATACTGGAGATAGGCAGCGTTCAAGAAATACTTTTGTTGGCACACCTTGCTGGATGGCTCCTGAAGTTATGCAGCAATTGCATGGATATGATTTTAAAGCAGATATATGGTCATTTGGTATAACTGCACTTGAACTTGCTCATGGTCATGCACCATTTTCCAAGTACCCACCGATGAAAGTTTTACTTATGACTTTGCAAAATGCCCCTCCTGGTCTTGATTATGAAAGAGACAAGAGATTTTCAAAGTCTTTCAAAGAGTTGGTTGCCACCTGCTTAGTGAAAGATCCAAAGAAACGTCCAAGCTCAGAAAAGCTTTTAAAGCACCACTTCTTTAAACAAGCCCGTCCTACTGATTATCTTGCTCGCACCATTCTAGATGGTCTTGCTCCATTAGGAGATCGTTTTAGAATGCTGAAGGCCAAAGAGGCAGATTTATTGATGCAGAATAAGGCTCTTTACGAGGATAAGGAACAATTATCTCAGAAAGAGTATATTCGAGGAATTAGTGCCTGGAATTTCAACCTGGAGGATTTAAAAAGTCAAGCTGCTCTTATCCAAGATGATGACATCCCAAATGCAGAAGAGCTACAAATGGATAAGAAGCAGAACAACCGATCTGATGACTTCGAGGTTCCAGCAGAGGGGCTATCTGCTGTAGAACCTAATCATTCAGATGCTGCACTCCCATTGGATAAGGAGGATGGATTCAACAATCTTCAGGATTTGGAGAGTTCACTTGCTTCATTTCCTATTAAACCTCTTCAAGCACTTAAAGGTTGTTTTGATACATGTGAGGATGATGTCAACAATACTAGTCCAAGAGATGACAATGAAATTTCTGGACTAAGTAGTTCATTGCCACAAAATGTCATAAATCAGAATAAAAAGTTTTTGAGTGGTTCTTTGTTGCCTGATAATTTTCTTTCTCCGAAAAAGGTTGTTACTGATGGGGACAGGGATTACCTACAAACAAAATATTCTTCTCAGCGGAATCATAGTGGTCCATTGTTACTTCGGCAGAAGAGAGACACCAACAACCTTCCATCGGTTGATGACACATCAGAAGGAGCAATTGTCCAGCGCAAGGGGCGGTTTAAGGTCACATCAGCAGATCCAATGGGTCCTTCAAACTGCAATTTTGGCCCAGCCGTTGGAGGTCCTAGCAGTCCACCAAATCACAGATCCATGGCTGCCTCTGTTCTTCCACCTCTGCAGTGCATCTTGCAAAATAACACTTTGCAGAGGGAAGAAATTATTAAATTAATAAAGTATGCTGAGCAATCTTGTGCCAAGAATACAGAATTGACAGAGGCAGGGGCAGTTGATCTTTCACAGGTACCACCTGTGGCAACTAGGGAGAGAGAGCTGAATTTTCAGGTGATTCAACTCCAACAGAGCATTGGGAGCCTTGTTGAGGAATTGCAAAAACAAAGAATGAAAAATGTTCAGTTAGAGAAACAATTGAGCTCAATGGGCAACAAATTTGAGAAATGA 1992 0.4152 MEHVLEKRFPLHAKDYELYEEVGEGVSASVYRALCIPLNVIVAIKVLDLEKCNNDLDGIRREVHTMSLIGHPNLLQAHCSFTAGHNLWVVMPYMAGGSCLHIIKTSYPEGFDEPVIATLLHEVLKALVYLHAHGHIHRDIKAGNILLDSNGSVKVADFGVSASMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKELVATCLVKDPKKRPSSEKLLKHHFFKQARPTDYLARTILDGLAPLGDRFRMLKAKEADLLMQNKALYEDKEQLSQKEYIRGISAWNFNLEDLKSQAALIQDDDIPNAEELQMDKKQNNRSDDFEVPAEGLSAVEPNHSDAALPLDKEDGFNNLQDLESSLASFPIKPLQALKGCFDTCEDDVNNTSPRDDNEISGLSSSLPQNVINQNKKFLSGSLLPDNFLSPKKVVTDGDRDYLQTKYSSQRNHSGPLLLRQKRDTNNLPSVDDTSEGAIVQRKGRFKVTSADPMGPSNCNFGPAVGGPSSPPNHRSMAASVLPPLQCILQNNTLQREEIIKLIKYAEQSCAKNTELTEAGAVDLSQVPPVATRERELNFQVIQLQQSIGSLVEELQKQRMKNVQLEKQLSSMGNKFEK* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1188 663 SMART serkin_6 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g1188 663 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g1188 663 Coils Coil 633 660 - -
Lan20g1188 663 SUPERFAMILY Protein kinase-like (PK-like) 13 312 IPR011009 -
Lan20g1188 663 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 660 - -
Lan20g1188 663 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g1188 663 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Lan20g1188 663 MobiDBLite consensus disorder prediction 533 562 - -
Lan20g1188 663 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 660 - -
Lan20g1188 663 CDD STKc_OSR1_SPAK 14 277 - -
Lan20g1188 663 MobiDBLite consensus disorder prediction 492 519 - -
Lan20g1188 663 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Lan20g1188 663 MobiDBLite consensus disorder prediction 491 521 - -
Lan20g1188 663 Gene3D Transferase(Phosphotransferase) domain 1 97 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1188 Lan-Chr20 16985744 16995881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1188 1 660 MAP Kinase Kinase Kinase Kinase AT5G14720 66.424 0.0 920
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Lan20g1188 Pkinase 3.8e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1188 K08835 - gmx:100784402 1109.75