Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1186 ATGGACAAAAGACAGTGCAACTCATCACAGGATCCTGAAGTGAGAAAGGGGCCATGGACCATGGAAGAAGACTTGATCTTGATCAACTATATAGCAAATCATGGTGAAGGTGTATGGAACTCCTTGGCTAAATCTGCTGGTCTTAAACGCACCGGAAAGAGCTGCCGACTCCGGTGGCTGAACTACCTCCACCCTGATGTTAGAAGAGGAAATATTACACCAGAGGAACAGCTTTTGATCATGGAACTTCATGCAAAGTGGGGAAACAGGTGGTCAAAAATTGCAAAGCATCTCCCAGGAAGAACTGATAATGAGATTAAGAATTTCTGGAGGACTAGGATCCAGAAGCATATTAAGCAAGCTGAGAATTTCCAACAACAATGTACTTTTGATCAGACAAATGATCATAATCATAATCATCATCAAGCAAGCACTAGTCAAATGTCTACCAACATGGTTCATCATGAGCCATTGGGAACAACATACTCTCCACCTTCATACCAAGGAGCAACTATGGATCCAATATTTCAAACTCAGTTGACCCCATTAATCCCTGATCAACCTACTTGTTGTCCTACCAATGACAACACCTATTGGAGCATGGAG 606 0.4241 MDKRQCNSSQDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYLHPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKHIKQAENFQQQCTFDQTNDHNHNHHQASTSQMSTNMVHHEPLGTTYSPPSYQGATMDPIFQTQLTPLIPDQPTCCPTNDNTYWSME 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1186 202 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Lan20g1186 202 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Lan20g1186 202 PANTHER TRANSCRIPTION FACTOR MYB21-RELATED 1 202 - -
Lan20g1186 202 CDD SANT 73 112 IPR001005 -
Lan20g1186 202 Gene3D - 73 148 - -
Lan20g1186 202 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 202 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lan20g1186 202 SMART sant 68 116 IPR001005 -
Lan20g1186 202 SMART sant 15 65 IPR001005 -
Lan20g1186 202 CDD SANT 18 63 IPR001005 -
Lan20g1186 202 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Lan20g1186 202 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Lan20g1186 202 Gene3D - 16 68 - -
Lan20g1186 202 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Lan20g1186 202 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Lan20g1186 202 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1186 Lan-Chr20 16958352 16963336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1186 10 177 MYB Transcription Factor Family AT3G01530 60.819 2.31e-69 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan20g1186 Myb_DNA-binding 5.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1186 K09422 - gmx:778046 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0846 8 10285680 10289607 Lan20g1186 20 16958352 16963336 LSH