Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1178 ATGAAAGAGTGCAACGACAATGAAATACCATCACTAGATTTCGAAGACCTGCAAGTTATAACCCCGGTGGGTCGCGGTGCGAAGGGAGTGGTGTTCCTGACTAAAACCGGCCAAACCGGTGAGCAGTCATGTCTGGCTCTGAAAGTAATATCGAAAGCCCTTCTTGAGAAAAAGAAGAAAGAAGGTTGTGCAGAATATAAGAGATTGTCGTTTGAGCAACAAGTGCTACGTCGTTTTGATCACCCTCTATTGCCTCGTTTGAGAGGGGTTATTGAAACTCAAAATATCGTTGGCTTCGCTATTGATTATTGCGATGGTGGTACTTTTCATTCTCTTCGGTCAAAACAATCTGAGAAAATGTTCTCACATGATACTATCAGGTTCTACGCGGTGGAATTGTTACTAGCATTAGAATATTTGCACAATTTGGGAATAGTATACAGAGATTTGAAGCCAGAAAACATAATGATCCAACAAAACGGTCACATAATGCTCGTTGATTTCGACCTCTCTACAAAGCTCAACACAAAATCAATTAGTGATGAATCATTATCCCAGTACAGTTATTATAACTCCTCAAAGTTGAAGAAAAAACGATGTAACTGCTTGTTGTCACGTTTTAAATATGGAATTTCACCATGTGATGGTGATTCAGAGTTAGTAGAGAAACAAGTAAGTATTTGCAAGAACACAATCATTCCACAAATTGAGAAATCAAATTCATTTGTTGGAACCGAGGAATATGTTGCACCAGAAGTTGTAGCAGGAAAGGGTCATGATTTTAGTGTTGATTGGTGGTCATACGGCGTCGTTTTATACGAGATGTTATATGGAACGACACCGTTTACGGGTTTAAATAGGAATCAAACGTTTCACAGTATCTTAACGAAGGAGCCGGAACTAACTGGAACGAAGACGGCGTTAAGGGATTTAATTAGGAGATTGTTGGAAAAAGATCCTGGCCGTAGGATTAAGGTACATGAGATCAAGGGTCATGATTTCTTCAAAGGGGTTAAGTGGGACATTGTGTTGGAAATAGCAAGACCACCTTATATTCCTCACAATGAGGTTAGGGACATTGTTGGGTTTAGCAAAAAAGATGTGGAGCTCTTTGTGCATGGAATTTATTTTCCAAACAGTGGTGATGAAGATAAAAATAATCACAAGGTGAGTCATAGTGAAACAAAGAATGAGGATTTTGGTATTTTTTGA 1212 0.3903 MKECNDNEIPSLDFEDLQVITPVGRGAKGVVFLTKTGQTGEQSCLALKVISKALLEKKKKEGCAEYKRLSFEQQVLRRFDHPLLPRLRGVIETQNIVGFAIDYCDGGTFHSLRSKQSEKMFSHDTIRFYAVELLLALEYLHNLGIVYRDLKPENIMIQQNGHIMLVDFDLSTKLNTKSISDESLSQYSYYNSSKLKKKRCNCLLSRFKYGISPCDGDSELVEKQVSICKNTIIPQIEKSNSFVGTEEYVAPEVVAGKGHDFSVDWWSYGVVLYEMLYGTTPFTGLNRNQTFHSILTKEPELTGTKTALRDLIRRLLEKDPGRRIKVHEIKGHDFFKGVKWDIVLEIARPPYIPHNEVRDIVGFSKKDVELFVHGIYFPNSGDEDKNNHKVSHSETKNEDFGIF* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1178 403 Pfam Protein kinase domain 237 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g1178 403 Pfam Protein kinase domain 19 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g1178 403 Gene3D Transferase(Phosphotransferase) domain 1 108 183 - -
Lan20g1178 403 Gene3D Phosphorylase Kinase; domain 1 16 107 - -
Lan20g1178 403 PANTHER SERINE/THREONINE-KINASE OXI1-LIKE PROTEIN 9 390 - -
Lan20g1178 403 MobiDBLite consensus disorder prediction 383 403 - -
Lan20g1178 403 SMART serkin_6 17 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g1178 403 PANTHER FLIPPASE KINASE 1-RELATED 9 390 - -
Lan20g1178 403 Gene3D Transferase(Phosphotransferase) domain 1 227 357 - -
Lan20g1178 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Lan20g1178 403 ProSiteProfiles Protein kinase domain profile. 17 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g1178 403 SUPERFAMILY Protein kinase-like (PK-like) 11 365 IPR011009 -
Lan20g1178 403 ProSiteProfiles AGC-kinase C-terminal domain profile. 336 403 IPR000961 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1178 Lan-Chr20 16757097 16758552 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1178 6 376 AGC Kinase Gene Family AT4G13000 58.333 3.63e-143 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lan20g1178 Pkinase 7.4e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1178 K20714 - gmx:100785773 483.411