Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1174 ATGGACTCACCCGGTGATGAACACGTTGTTGGTGGCGCTGAACAAAACGACGCCGTTATACCCTTTTCTCACAGAGAAGAGGATGATGAAGAAATTCAACAACACCAACACCAACACCACAATTCTCATCCTCTTACCGGTGATGGTGCCAGTCCTGGAAAGATATTTATAGGTGGTTTAGCGAGAGAAACGACCATTGCCCAATTTATCAAGCACTTTGGTAAATATGGTGAGATTACTGACTCTGTCATCATGAAGGACCGCAAAACTGGCCAGCCTCGTGGGTTTGGGTTCATAACATATGCAGATCCCTCTGTGGTTGATAAAGTCATTGAGGACACTCATGTAATCAATGGCAAACAAGTTGAGATTAAGCGCACAATACCAAGGGGAGCTGGTGGTTCTAAGGATTTTAGGACAAAGAAAATTTTTGTAGGTGGGATTCCTTCAACTGTGACTGAAGATGAATTTAGAGACTTTTTTACCCGCTATGGAGAAGTCAGAGATCACCAAATAATGCGGGACCACTCCACTAATCGTTCTCGCGGCTTTGGGTTTATCACCTTTGATGCTGAGGAAGCTGTTGATGATCTTCTGTCTTTGGGGAACAAGATTGAGTTTGCTGGAGCTCAGGTGGAAATTAAGAAGGCTGAACCAAAGAAGTCAAACCCACCGCCTCCATCATCCAAGCGTTACAATGACTCAAGGTCTTCCTACGGTGGTGGTGGTGGATATGGAGGAGATGCTTATGAAGGATTCGGTGGCGGCTTTGGTGTTGGAGGTTACAGATCCGGTGCTGGTGTCTATGGTGGTAGGGGCGCTGCTGCATATGGTGGCTACGGGAGTGAATTTGGAGGCTACGGTGGCTATGCTGGTGCGATGGGCCCCTATAGAGATCCTTCCCTTGGATACGCCGGTCGTTATGGTGGAGCCTTTAGCAGAGGCTATGGAAGTGAGTTTGGTGGGTACGGTGGACCAAGTGAGAGTTATGGTGCATATGGTGGTGCTGCCAGTGGTGGTGCTTCTTCTGGTGCCGGTGCCTATCAAAGTGGTTATGATGCCGGATTAGGTGGTGGATATGGAGGAGGGGCTAGTGGAGGCTCCTTTTATGGGAGTAGAGGAGGTTATGGTGCAGGTCGATATCATCCTTATGGAAGATAG 1161 0.4806 MDSPGDEHVVGGAEQNDAVIPFSHREEDDEEIQQHQHQHHNSHPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPRGAGGSKDFRTKKIFVGGIPSTVTEDEFRDFFTRYGEVRDHQIMRDHSTNRSRGFGFITFDAEEAVDDLLSLGNKIEFAGAQVEIKKAEPKKSNPPPPSSKRYNDSRSSYGGGGGYGGDAYEGFGGGFGVGGYRSGAGVYGGRGAAAYGGYGSEFGGYGGYAGAMGPYRDPSLGYAGRYGGAFSRGYGSEFGGYGGPSESYGAYGGAASGGASSGAGAYQSGYDAGLGGGYGGGASGGSFYGSRGGYGAGRYHPYGR* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1174 386 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 26 386 - -
Lan20g1174 386 SMART rrm1_1 54 125 IPR000504 GO:0003723
Lan20g1174 386 SMART rrm1_1 142 215 IPR000504 GO:0003723
Lan20g1174 386 Gene3D - 137 252 IPR012677 -
Lan20g1174 386 SUPERFAMILY RNA-binding domain, RBD 34 132 IPR035979 GO:0003676
Lan20g1174 386 SUPERFAMILY RNA-binding domain, RBD 139 248 IPR035979 GO:0003676
Lan20g1174 386 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 53 129 IPR000504 GO:0003723
Lan20g1174 386 MobiDBLite consensus disorder prediction 216 238 - -
Lan20g1174 386 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 141 219 IPR000504 GO:0003723
Lan20g1174 386 MobiDBLite consensus disorder prediction 1 51 - -
Lan20g1174 386 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 143 210 IPR000504 GO:0003723
Lan20g1174 386 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 55 122 IPR000504 GO:0003723
Lan20g1174 386 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 26 386 - -
Lan20g1174 386 MobiDBLite consensus disorder prediction 20 42 - -
Lan20g1174 386 Gene3D - 20 136 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1174 Lan-Chr20 16681752 16685281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1174 53 254 Eukaryotic Initiation Factors Gene Family AT2G23350 26.066 2.52e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1174 K12741 K14314 gmx:100793209 440.269