Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1173 ATGGAGCAACCTATCAATGAAGTTGAGTTTTTGTCAGAGTTTCAAAATTCACTTTCTGAGTTTCACAGTCAAAATCTTCCTTCAACATCTAGGACTTCCCATCCTTCTTTGCGACCTACCTTAGGACCATCTCGGAATCACACTGCTTCATCAACATCTCACCATAATTATGCCTTAAAGATAATTAACAATGTGGAGGAACATGAAGGACTGCCAACAAAATCTGCTAAGAGTTACTGTCAGTCAGAGGTTACTACTTTTTGTCCAAGCCCATCCCAGAATAGTTTCTACTCAACTACTGTCTATTTGGAAGCCAAAGAAAGTTTCACAAACACCGAAGTCAGCGAGTGGGCTAGTAGTGTCGATAAGTCATGTGATGAGAGTGGAGAAGTTAAAAATTACCGTGATTTCAATGAGAGCAGGAAGACCAGCATTTATAGAGCAAGTACGGGAAGTGATGCTAGCGACGAGAGCAGCACGAATAGTTTGAGCAGTGCTATGTATAAACCACATAAGGCAAATGATATAAGATGGGAAGCGATTCAAGCCGTGCGTGCCCGTGATGGGATGTTGGAAATGAGGCATTTCAGGTTGTTGAAGAAATTAGGATGTGGAGATATAGGGAGTGTGTATCTAGCGGAATTGAGTGGCACAAGGACTTCTTTTGCCATGAAAGTGATGAACAAAACGGAGCTGGCGAGTCGCAAGAAGCTTCTGAGGGCTCAGACCGAGAGAGAGATATTGCAATGTCTAGATCATCCATTTCTGCCAACATTATATACACACTTTGATACAGAATCATTCTCCTGCTTGGTAATGGAGTTCTGCCCCGGTGGGGACTTGCATGCACTCAGGCAAAGACAAGCTGGGAAGCATTTTTCTGAGCATGCTGTCAGGTTTTATGTGGCAGAAGTTCTCCTTGCTTTGGAGTACTTGCACATGCTTGGGATCATTTACAGAGACCTTAAACCGGAGAATGTGTTGGTGAGAGAAGATGGTCATATAATGTTGTCAGATTTTGATCTCTCTTTAAGGTGCACCGTCAGTCCAACGCTAGTAAAGTCATCAAACTCTACTTTGGTGACAAAAAGCTCAGGAGGATACTGCTTGGAGCCGACATGTATAACACAGCCGGACTGCATCACGCCTTCGTGTTTCACACCACGTTTTCTATCCAAGAAGAAAGAAAAGAAGTTCAAGCCGAGATACGACACACATCATCAGGTCACCCCTCTGCCTGAGCTTATAGCCGAGCCAACAAACGCGCGATCGATGTCATTTGTTGGCACACATGAGTACTTGGCACCTGAGATTATTAAGGGAGAAGGGCATGGCAGCGCTGTAGACTGGTGGACTTTTGGCATATTCTTATACGAGCTTTTGTTTGGTAGAACACCATTCAAAGGCTCAGTGAATCGAGCGACACTGTTTAATGTGGTTGGGCAGCCATTAAGGTTTCCAGAATCTCCTACTGTCAGCTTTGCTGCCAGGGACTTGATTAGGGGTTTGCTTGTGAAAGAGCCGCAGCATCGTCTTGCCTATAGACGTGGAGCTACAGAAATTAAACAACATCCGTTCTTTCAGAATGTTAATTGGGCACTTATCCGTTGCGCGAATCCGCCAGAGGTGCCAAGACCAGCTGCTGTTAGAGCAGCACAGACCGAGAAGGACCCTCCTGGTGTGAAACCTTCTGGTAATTATTTAGATATTGATTTCTTTTGA 1722 0.4448 MEQPINEVEFLSEFQNSLSEFHSQNLPSTSRTSHPSLRPTLGPSRNHTASSTSHHNYALKIINNVEEHEGLPTKSAKSYCQSEVTTFCPSPSQNSFYSTTVYLEAKESFTNTEVSEWASSVDKSCDESGEVKNYRDFNESRKTSIYRASTGSDASDESSTNSLSSAMYKPHKANDIRWEAIQAVRARDGMLEMRHFRLLKKLGCGDIGSVYLAELSGTRTSFAMKVMNKTELASRKKLLRAQTEREILQCLDHPFLPTLYTHFDTESFSCLVMEFCPGGDLHALRQRQAGKHFSEHAVRFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCTVSPTLVKSSNSTLVTKSSGGYCLEPTCITQPDCITPSCFTPRFLSKKKEKKFKPRYDTHHQVTPLPELIAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSVNRATLFNVVGQPLRFPESPTVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQNVNWALIRCANPPEVPRPAAVRAAQTEKDPPGVKPSGNYLDIDFF* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1173 573 Gene3D Transferase(Phosphotransferase) domain 1 280 349 - -
Lan20g1173 573 Gene3D Phosphorylase Kinase; domain 1 194 279 - -
Lan20g1173 573 Pfam Protein kinase domain 197 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g1173 573 Pfam Protein kinase domain 424 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g1173 573 SUPERFAMILY Protein kinase-like (PK-like) 173 550 IPR011009 -
Lan20g1173 573 PANTHER FLIPPASE KINASE 1-RELATED 54 573 - -
Lan20g1173 573 MobiDBLite consensus disorder prediction 21 52 - -
Lan20g1173 573 CDD STKc_phototropin_like 194 547 - -
Lan20g1173 573 PANTHER SERINE/THREONINE-PROTEIN KINASE D6PKL3 54 573 - -
Lan20g1173 573 ProSiteProfiles Protein kinase domain profile. 196 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g1173 573 SMART serkin_6 196 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g1173 573 Gene3D Transferase(Phosphotransferase) domain 1 421 545 - -
Lan20g1173 573 ProSitePatterns Serine/Threonine protein kinases active-site signature. 317 329 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1173 Lan-Chr20 16656965 16660801 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1173 99 573 AGC Kinase Gene Family AT5G47750 70.040 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lan20g1173 Pkinase 6.9e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1173 K08286 - gmx:100810909 870.922