Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1171 ATGGAGAGGGAGGTTAAGGAAAAGCTGTGGAATGGTGATAGAGAAGCACAAATTGAAGGAGCTATAGAACTTAGTAGATTAAGTAGTAAGAGAAGGCACAAATTGGTAGAAAGTGGAGTTATAGAACCTCTTATTTCCATGCTTCATTCTCAAAGTTATGAAGCCATTGAAGCTTCTCTTTCTGCTCTACTCAGCCTTGCCTATGGCAGTGAAAGGCATAAGATTCTGATCATGAAGTCTGGAGTTTTACCAGTTTTGTTTAATCTGTTTCATTGCCAATGCCAAAGAGTTATAGAATTGGCAATAGCAGCCATGCTAACACTATCTTCTTGTAAGGAAAACAAGGTAGCATTTGCTTCATCTGGTGCAGTCAAACTCTTAGTTGAATTTGTCAATAGCAATAATAACATTATTGAGTCCAAACTTGATGCTATAGCTACTCTCCACAACCTCACAACATTCAAAGAGATTATTCCATTGATTATCTCTTCTGGTGTTATACTTTCCTTACTTGAACTAATCCACAACTCATTCAAATCATCAACACTGGTTGAGAAAGCAATGGGGTTGCTAGAAAGTATTGTATCTTCTTCAAGGAGTGCACTTTGTAAGGCTGCTAGTATTGGTGGAGCAATCAAGATACTTGTTGAGACTATTGAAGATGGTTCTTTACTAGGAAAAGAGCACGCAGTGGTGATACTTTTACTTATATGCAAAAGTTGTAGAGAAAAGTATAGAGGGTTGATTTTGAGAGAAGGAGTGATGCCAGGGTTGCTCCAGTTAAGTGTGGATGGAACATGGAGATCCAAAAACATGGCTAGAGAACTATTGTTGCTTCTGAGGGATTCTTGTGATTGTAGTAAGTCAACACATAATAAAGAAATGAAGAACCATGAGCTTATAGGGAGGATCATGGAAGAAATTGATGCAGAAGGAGAGAAAATGGCTGATTCTAAGTTGAGGTTGGTGGAGGAAATGATTGCAAAGCTCAATGTAATCTCTTTCAATTAA 1011 0.3788 MEREVKEKLWNGDREAQIEGAIELSRLSSKRRHKLVESGVIEPLISMLHSQSYEAIEASLSALLSLAYGSERHKILIMKSGVLPVLFNLFHCQCQRVIELAIAAMLTLSSCKENKVAFASSGAVKLLVEFVNSNNNIIESKLDAIATLHNLTTFKEIIPLIISSGVILSLLELIHNSFKSSTLVEKAMGLLESIVSSSRSALCKAASIGGAIKILVETIEDGSLLGKEHAVVILLLICKSCREKYRGLILREGVMPGLLQLSVDGTWRSKNMARELLLLLRDSCDCSKSTHNKEMKNHELIGRIMEEIDAEGEKMADSKLRLVEEMIAKLNVISFN* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1171 336 Gene3D - 3 204 IPR011989 -
Lan20g1171 336 PANTHER U BOX DOMAIN-CONTAINING 1 312 - -
Lan20g1171 336 SUPERFAMILY ARM repeat 5 305 IPR016024 -
Lan20g1171 336 SMART arm_5 70 110 IPR000225 GO:0005515
Lan20g1171 336 SMART arm_5 154 196 IPR000225 GO:0005515
Lan20g1171 336 SMART arm_5 111 153 IPR000225 GO:0005515
Lan20g1171 336 SMART arm_5 28 68 IPR000225 GO:0005515
Lan20g1171 336 Pfam Armadillo/beta-catenin-like repeat 31 67 IPR000225 GO:0005515
Lan20g1171 336 Gene3D - 205 291 IPR011989 -
Lan20g1171 336 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 122 166 IPR000225 GO:0005515
Lan20g1171 336 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 312 - -
Lan20g1171 336 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 39 81 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1171 Lan-Chr20 16645230 16647094 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1171 44 305 U-box Gene Family AT1G24330 31.203 2.22e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1171 - - lang:109336206 604.364