Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1170 ATGGCCAAATCAATTTCTCTAACTTATCACCTTTCCAGACTCATATCTTGTTCTTCTTCAACAACAACAATAACAACACTCACATTCCTCTCTCAATCTCAATTCCATTTTCCTTCTAGAACCTTCTCTTTCAGACCTCTCTCCACCACTACCACTCCATACCCTCTCCAATACGACTTAATTATTAATCGCCCTCCTCCCCAAACACCTCGCCCACCACCTGTTCGATCAAATTCCTCTAACAACAATGCCCTCTCTGAACCCGATGAACCGGAGCTTAGACTAGACAGCTGGGTGGACCGAAAACTCGCTGAACCGGGTTCCCAACTTGAAAAGGGAAAGAGGAAGTATTACAACAAAAGGAGGAAGAGGATGTACGGTGGTTCTGACTCTGATGAAGATGGTAACAGGAGAATGGATGATGAGATGATTGAGCTGAAACCTGAAGTTGTAGAGTTTCCTACACTGCATAAGAGAGAAGAGGAATTGCATTTCTACGACGCATTTAGTTATCCGTGGGAGAAGGATAAGCATTACAAGATGGTGTATCAGTTGGAGAAGAAGTATTTTCCGGACCAGTGTCTCGATAAGGCATTTTTGCAACCAGGGGAGAAGCAAAAACAATCAAATTTAAATGATATTGAAAATAAGGCCAAGAAGGAGGAGGAGGATAAGAAGTTGGTTTTTTTTGAGGGAGAGAAAGAAAAGAGTGATAAAGATGTTAGTGAGAAGAAGGTGGAGGATTTTTTTAAGGGTTTGAAGAAGAAGATTAATAATGATTCAGTTGTTGGTGATGGGAATGTGAATGGAGTAGGAGAGCCATTTTTTTCATCAAGGAGGACTGGTCTTCCTCCTGTTTGGGATACTCCACATGGCACTGTGCTGTTGATTAACAAACCCAAAGGTTGGACTTCATTCACAGTTTGTGGAAAGCTGCGTCGCCTAGTCAAAGTGAAAAAGGTAGGCCATGCTGGAACTCTTGACCCAATGGCTACTGGTTTATTGATTGTTTGTGTTGGCAAAGCAACAAAACTGGTAGACAGATATCAAGGGATGATTAAGGGTTATAGTGGGGTTTTCCGCTTAGGGGAGGCTACTTCAACATGGGATGCCGATTCACCAGTCATTCAACGTGAGCCATGGGAGCACATCAAAGATGAGGACATAAAGAAAAATGCTTCATCCTTTTGTGGGGAGATTTGGCAAGTTCCTCCAATGTTCTCTGCTATTAAAGTTGGAGGTGAAAAGATGTACGAGAAAGCAAGGAGAGGAGAAAGCATTGAACTCTCACCAAGACGGATTTCAATTTTCCAGTTTGACATAGAGCGTAGCTTGGATGACAGCTGCTCCCATCTTACTGCTCTTAGAAGAGATTCAATTGGGCAATATTTAGCTGATGATGCATGGGAATTTCAAGAGCTGGAAGAAGCTATCACCAAAAGTTATGTCTAA 1452 0.4229 MAKSISLTYHLSRLISCSSSTTTITTLTFLSQSQFHFPSRTFSFRPLSTTTTPYPLQYDLIINRPPPQTPRPPPVRSNSSNNNALSEPDEPELRLDSWVDRKLAEPGSQLEKGKRKYYNKRRKRMYGGSDSDEDGNRRMDDEMIELKPEVVEFPTLHKREEELHFYDAFSYPWEKDKHYKMVYQLEKKYFPDQCLDKAFLQPGEKQKQSNLNDIENKAKKEEEDKKLVFFEGEKEKSDKDVSEKKVEDFFKGLKKKINNDSVVGDGNVNGVGEPFFSSRRTGLPPVWDTPHGTVLLINKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKKNASSFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFDIERSLDDSCSHLTALRRDSIGQYLADDAWEFQELEEAITKSYV* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1170 483 SUPERFAMILY Pseudouridine synthase 293 478 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lan20g1170 483 TIGRFAM TruB: tRNA pseudouridine(55) synthase 293 440 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lan20g1170 483 Coils Coil 204 224 - -
Lan20g1170 483 Pfam TruB family pseudouridylate synthase (N terminal domain) 313 443 IPR002501 GO:0006396
Lan20g1170 483 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 270 481 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lan20g1170 483 MobiDBLite consensus disorder prediction 109 138 - -
Lan20g1170 483 Hamap tRNA pseudouridine synthase B [truB]. 291 483 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Lan20g1170 483 MobiDBLite consensus disorder prediction 61 92 - -
Lan20g1170 483 Gene3D Pseudouridine synthase 288 482 - -
Lan20g1170 483 MobiDBLite consensus disorder prediction 123 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1170 Lan-Chr20 16632826 16639068 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1170 294 411 NAC Transcription Factor Family AT3G57150 35.593 8.82e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1170 K03177 - gmx:100793939 593.193