Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1157 ATGGCAAAGACCTTCAAGTACGTTATTCTCGGTGGAGGAGTTTCTGCTGGTTATGCAGCAAGGGAGTTTGCCAAACAGGGACTAAAGCCTGGGGAGCTAGCACTCATATCCAAAGAAGCGGTAGCACCATATGAACGTCCTGCTCTAAGCAAGGCATACCTTTTCCCAGAGTCTCCTGCTAGACTTCCTGGGTTTCATGTTTGTGTTGGAAGCGGGGGAGAAAGATTGCTTCCTGAGTGGTACACAGAGAAAGGCATAGAGCTAATTCTTAGTACAGAAATAGTGAAAGCAGACCTTGCTGCAAAATCTCTGACCAGTGCACGAGGAGAAACATTCAATTACCAGAATTTGGTTATTGCAACTGGATCAACAGTTATAAGGCTGACAGATTTTGGTGTACAAGGAGCAGATGCCAAAAACATCTTTTACTTGAGAGAGGTTGACGATGCCGACAAATTGTATGAGACAATCAAAGGAAAGAAGAACGTGAAAGCAGTGGTTGTTGGTGGTGGATACATTGGTCTGGAGATTAGTGCTGTTTTGAAACTCAACAATATTGATGTTACCATGGTCTACCCAGAGCCTTGGTGTATGCCACGACTTTTCACATCTGATATTGCTGCATTCTATGAGGGATATTATGCAAATAAGGGGGTCAATATCATTAAAGGAACTGTTGCTGTTGGATTCAATACTAATTCTGATGGAGAGGTAAAGGAAGTCAAACTAAAGGATGGCAGGGTCCTGGAAGCTGATATTGTTGTTGTTGGTGTTGGAGGAAGGCCTCTAGTATCCTTATTCAAGGGGCAGGTTGAAGAGGAGAAGGGTGGAATTAAGACTGATTCCTCCTTCAAAACAAACGTTTCCGACGTGTATGCTGTTGGTGATGTTGCTACTTTCCCATTGAAATTGTACGGTGAGTTGAGAAGAGTCGAACATGTTGATCATGCTCGCAAATCAGCCGAGCAGGCAGTGAAGGCCATCAAGGCAGCCGAAGATGGAAAAACAGTTGAGGAGTATGATTACCTTCCGTACTTCTATTCCCGTTCATTTGATCTGTCTTGGCAATTCTATGGTGACAATGTTGGCGACACAGTGCTATTCGGAGACAACAAACCAGAGTCACCAAAGCCTAAGTTCGGGACATACTGGATTAAAGGTGGAAAAGTTGTCGGTGCCTTTCTGGAGGGTGGAACTCCTGAGGAGAACAATGCTATTGCTAAAGTTGCAAGGATCCAGCCACCAGTGGAGAGTGTGGATCAACTTGCAAAGGAGGGTCTTTCCTTTGCTAGCAAAATATAA 1302 0.4432 MAKTFKYVILGGGVSAGYAAREFAKQGLKPGELALISKEAVAPYERPALSKAYLFPESPARLPGFHVCVGSGGERLLPEWYTEKGIELILSTEIVKADLAAKSLTSARGETFNYQNLVIATGSTVIRLTDFGVQGADAKNIFYLREVDDADKLYETIKGKKNVKAVVVGGGYIGLEISAVLKLNNIDVTMVYPEPWCMPRLFTSDIAAFYEGYYANKGVNIIKGTVAVGFNTNSDGEVKEVKLKDGRVLEADIVVVGVGGRPLVSLFKGQVEEEKGGIKTDSSFKTNVSDVYAVGDVATFPLKLYGELRRVEHVDHARKSAEQAVKAIKAAEDGKTVEEYDYLPYFYSRSFDLSWQFYGDNVGDTVLFGDNKPESPKPKFGTYWIKGGKVVGAFLEGGTPEENNAIAKVARIQPPVESVDQLAKEGLSFASKI* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1157 433 Gene3D - 8 324 IPR036188 -
Lan20g1157 433 SUPERFAMILY FAD/NAD(P)-binding domain 1 328 IPR036188 -
Lan20g1157 433 Gene3D - 128 259 IPR036188 -
Lan20g1157 433 PANTHER APOPTOSIS-INDUCING FACTOR 1 2 433 - -
Lan20g1157 433 Gene3D - 345 433 IPR016156 GO:0016491|GO:0050660
Lan20g1157 433 PANTHER MONODEHYDROASCORBATE REDUCTASE-LIKE ISOFORM X1 2 433 - -
Lan20g1157 433 PRINTS FAD-dependent pyridine nucleotide reductase signature 7 26 - -
Lan20g1157 433 PRINTS FAD-dependent pyridine nucleotide reductase signature 114 132 - -
Lan20g1157 433 PRINTS FAD-dependent pyridine nucleotide reductase signature 164 182 - -
Lan20g1157 433 PRINTS FAD-dependent pyridine nucleotide reductase signature 251 267 - -
Lan20g1157 433 PRINTS FAD-dependent pyridine nucleotide reductase signature 276 298 - -
Lan20g1157 433 SUPERFAMILY FAD/NAD-linked reductases, dimerisation (C-terminal) domain 338 431 IPR016156 GO:0016491|GO:0050660
Lan20g1157 433 Pfam Pyridine nucleotide-disulphide oxidoreductase 6 321 IPR023753 GO:0016491
Lan20g1157 433 PRINTS Pyridine nucleotide disulphide reductase class-I signature 6 28 - -
Lan20g1157 433 PRINTS Pyridine nucleotide disulphide reductase class-I signature 164 189 - -
Lan20g1157 433 PRINTS Pyridine nucleotide disulphide reductase class-I signature 252 266 - -
Lan20g1157 433 PRINTS Pyridine nucleotide disulphide reductase class-I signature 291 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1157 Lan-Chr20 15862577 15867623 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1157 115 302 Acyl Lipid Metabolism Gene Families AT3G17240 32.821 7.25e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1157 K08232 - gmx:100787700 781.171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0417 8 6386843 6393036 Lan20g1157 20 15862577 15867623 LSH
Lan20g1157 20 15862577 15867623 Lan4g1382 4 22922140 22928733 LSH
Lan4g0983 4 13590061 13598085 Lan20g1157 20 15862577 15867623 PCT
Lan20g1157 20 15862577 15867623 Lan4g0983 4 13590061 13598085 PCT