Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1156 ATGGGTTCATTCTCTGGAACTTGTGAAATAGTTGAAGCAAGGGAAGATCGAAATACAGGGAAAGCTGCAGAGGTTTACCAATCCAACTCTGGCTATAGCGTGGCTGAAAAAAATAAGAAGCTTCCTGTGCTGAATCTGGGATGCAAGAATAATCCAGATAATGATATCAATAAGCTGTTTGAATCATTTACTCTTAAATCTTCATCAAGGGATTTAGGTATTCTACAAGATGGTACTAGCCCAAAGATAAAAAGTGCATTAAAAAAACCAATCACGGTGGGTGTTCCTCGATCCCCACGAGTTGGGACTTCTGAGCCTGCGACATTGAAGCAGGCATTAAGAGACATGTGTATATCTAAGGCTTCAGAAATGGCTGCTATGAAAAGATTATCAAAGTCAACATCTGCTTCCCCAAGAATTTCCGAGGTTGGGAAGATACAGACATTGTACAATTCAGTTGTAGTTGAAGGTAGACAGTCTGGGCCCTCTAACCTTGGGAGTAAGGCGAGTACATTTGAAATATCTCTAGTGTCAGAAGAAAGCAAGTCACTTTCCTTAGATAAAATATCCCAGTCTCATCAAATTACCAAAAGCACATCTTTGGTCCAAAGTGATCATTCCTCCAAAATTGCTTTTGCAACTACAGAAAATGACACTGATGGGTCATTGATGCATAGTGATGTGGTATGTTCATCAAGTAAAGTTGGTGATCAATCACTGCCGTTGGAGCCTGCTCAAGTAGAAAAGCAAACATCTGCATCTTCTCCATCTATTCGTAACACTAATGGAAGTGAAGTGGAGTTGCCTGAAGAGTTCTCTTCAACTAAAAAATTAGGAAGCAAGGCGCCCTTCTCAAAGAATGGGCAGAAAGGTAGGTTACAAACAGTATCTTCCTCTTCTACTTCAGTATATGGCAATAGAGTGTGCAAACTGTCACGTAATGCCCCCCGTACGGTCAAATCAATCATCAAAAACAAGAATTTGGGTAAGAAGAAACTAAACCAGGGTTCAGGTTCTGTTTTATGCTATCCTACATCAGATGAAGTAAATAACAAGTCTGTTCCAGGTGAAGCTAAACTGGTTTGCGAGAGATGTTTGTGTGCTATAGAAAATACAAGTAAAGAAAACAACCAAGGTGTTGTAGCATTGGGATCTATCAGTCCTGGAGAGGGTGTGAACTTGACTAGTGTGCGCCCTGGCTCGGCATCAACCGCCTATAACAACAGCAGAGAAGTTTCAAAAGTGAAAAAGAACACCAGATTGAAAGAGCAACTTGAATTTTCACAAAGTTCAAAGAGTAGCCAAGGTGACTACAGTAGTAGTACAAGTACCAGTGAAGACAGCAATCTCAGTGGTTCTATTTGTGGCAATAGGCCTCACATGTCAAAGGATGTTAGGTGGGAAGCCATACGACATGCTCAAATGCAGCATGGAGTCTTGAGCTTGAGACACTTCAATCTTCTGAAGAAACTTGGTTGTGGAGACATCGGAACTGTATATCTTGCTGAACTCATTGGCACAAATTGCTTGTTTGCTATTAAGGTCATGGACAATGACTTTTTGGCTAGAAGAAAGAAGATGCCCAGGGCTCAAACTGAAAGGGAAATATTAAGGATGCTGGATCATCCCTTTCTTCCCACGATGTATGTGCAGTTTACATCAGATAATCTTTCATGTCTGGTCATGGAGTATTGTCCAGGAGGAGATCTTCATGTTCTACGGCAGAAACAGCTTGGTAGAAGTTTTTCAGAGCCAGCAGCTAGGTTTTATGTTGCTGAAGTCCTTCTTGCTTTGGAGTATTTGCACATGCTTGGAGTTGTTTACCGCGATTTGAAACCTGAAAACATTCTTGTTCGAGAAGATGGCCATATTATGCTCACAGATTTTGACCTGTCACTAAGGTGTGATGTTAGCCCAACACTTCTTAAATCATCTGATATAGATCCTGCTAAGATTTCTGGTCCTTGTGCACAATCGAGTTGCATTGAACCATTCTGTATTGAACCAGCCTGTCAAGTTGCATGCTTCAGCCCTAGATTCTTACCTCCTGCTGCCAGAGCAAGGAAATTAAAAGCTGATCTTGCTGCTCATATCAGATCATTGCCACAGCTAGTGGCTGAACCAACTGATGCAAGATCAAATTCATTTGTCGGTACTCATGAATACTTAGCACCGGAGATCATCAAAGGAGAGGGACATGGTGCTGCAGTTGACTGGTGGACATTTGGTGTTTTTCTTTATGAGCTTTTATACGGTAAAACACCCTTCAAAGGTTCAAATAATGAAGAAACATTAGCCAACGTAGTTCTGCAGAGTCTTAGATTCCCCGACACCCCATTTGTTAGTTTCCATGCGAGGGATCTCATAAGAGGGTTGCTGGTTAAAGAGCCTGAAAGCCGTTTAGGTTCACAAAAAGGTGCTGCTGAGATCAAACAGCACCCCTTCTTTGAAGGTCTTAATTGGGCCTTAATACGCTGTGCTATCCCACCGGAACTTCCAGACCCTTTTGAGTTTGGTGGTTCAGACATGACCTCGCAGTCACACGGCAATGGCAGTAAGTATTTAGAGTGTAGACCAGGAGAGCAAGTGGAATTTGAGTTGTTTTAA 2607 0.4189 MGSFSGTCEIVEAREDRNTGKAAEVYQSNSGYSVAEKNKKLPVLNLGCKNNPDNDINKLFESFTLKSSSRDLGILQDGTSPKIKSALKKPITVGVPRSPRVGTSEPATLKQALRDMCISKASEMAAMKRLSKSTSASPRISEVGKIQTLYNSVVVEGRQSGPSNLGSKASTFEISLVSEESKSLSLDKISQSHQITKSTSLVQSDHSSKIAFATTENDTDGSLMHSDVVCSSSKVGDQSLPLEPAQVEKQTSASSPSIRNTNGSEVELPEEFSSTKKLGSKAPFSKNGQKGRLQTVSSSSTSVYGNRVCKLSRNAPRTVKSIIKNKNLGKKKLNQGSGSVLCYPTSDEVNNKSVPGEAKLVCERCLCAIENTSKENNQGVVALGSISPGEGVNLTSVRPGSASTAYNNSREVSKVKKNTRLKEQLEFSQSSKSSQGDYSSSTSTSEDSNLSGSICGNRPHMSKDVRWEAIRHAQMQHGVLSLRHFNLLKKLGCGDIGTVYLAELIGTNCLFAIKVMDNDFLARRKKMPRAQTEREILRMLDHPFLPTMYVQFTSDNLSCLVMEYCPGGDLHVLRQKQLGRSFSEPAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCDVSPTLLKSSDIDPAKISGPCAQSSCIEPFCIEPACQVACFSPRFLPPAARARKLKADLAAHIRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGKTPFKGSNNEETLANVVLQSLRFPDTPFVSFHARDLIRGLLVKEPESRLGSQKGAAEIKQHPFFEGLNWALIRCAIPPELPDPFEFGGSDMTSQSHGNGSKYLECRPGEQVEFELF* 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1156 868 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 868 - -
Lan20g1156 868 ProSitePatterns Serine/Threonine protein kinases active-site signature. 606 618 IPR008271 GO:0004672|GO:0006468
Lan20g1156 868 ProSiteProfiles Protein kinase domain profile. 485 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g1156 868 Pfam Protein kinase domain 486 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g1156 868 Pfam Protein kinase domain 713 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g1156 868 SUPERFAMILY Protein kinase-like (PK-like) 462 843 IPR011009 -
Lan20g1156 868 PANTHER FLIPPASE KINASE 1-RELATED 1 868 - -
Lan20g1156 868 CDD STKc_phototropin_like 483 835 - -
Lan20g1156 868 MobiDBLite consensus disorder prediction 424 456 - -
Lan20g1156 868 MobiDBLite consensus disorder prediction 244 299 - -
Lan20g1156 868 MobiDBLite consensus disorder prediction 244 269 - -
Lan20g1156 868 MobiDBLite consensus disorder prediction 278 299 - -
Lan20g1156 868 Gene3D Phosphorylase Kinase; domain 1 483 564 - -
Lan20g1156 868 SMART serkin_6 485 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g1156 868 Gene3D Transferase(Phosphotransferase) domain 1 709 825 - -
Lan20g1156 868 MobiDBLite consensus disorder prediction 392 412 - -
Lan20g1156 868 Gene3D Transferase(Phosphotransferase) domain 1 565 633 - -
Lan20g1156 868 MobiDBLite consensus disorder prediction 392 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1156 Lan-Chr20 15788972 15793325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1156 1 868 AGC Kinase Gene Family AT3G52890 51.821 0.0 841
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lan20g1156 Pkinase 1e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1156 - K08286 gmx:100813470 1318.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1173 8 16318242 16323797 Lan20g1156 20 15788972 15793325 LSH
Lan9g0452 9 6778358 6780124 Lan20g1156 20 15788972 15793325 PCT
Lan5g1204 5 25976331 25978060 Lan20g1156 20 15788972 15793325 PCT
Lan5g0283 5 3961911 3968261 Lan20g1156 20 15788972 15793325 PCT
Lan20g1156 20 15788972 15793325 Lan5g0283 5 3961911 3968261 PCT