Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1151 ATGGATACAAACAAAAAGAACTCTTGTAATTCGAATGGCAAAGGTCTAGCTGAGAGTGAAACCTCTCAGTTAGGTTCTGAACAATTTGCTTCGGCTTTCGATGCGACCGCCTTTTCTGAACACTTTAATTCATCTCTGATGGATTTTGAAGTGTTTTCAACCTTGATGAACACGCCACCAATGCAGCCGAGTTCTCAAGAGTTTGAGAACATTGGTATGCCAGTGTCAGTGTCATCATTGCCCGAGCCACTTGATTGTTTGAAAGGAAACATGGTTCCTTCATTTTTGTCCAAAACCTTTGACCTCGTGGATGATCCGGGTTCGGATCGGATTATATCGTGGGGTGCTAATGGCGCGAGCTTCGTTGTTTGGGACCCTTTGGAGTTCTCAAGATTTGTCTTGCCTCGGAATTTCAAGCACAACAATTTCTCAAGTTTTGTTCGCCAGCTTAATACTTATGGATTCCGCAAGATTGACACTGATAAATGGGAGTTTTTTAATGAAGCTTTCCAGCGAGGGAAGAAGCATTTACTGAAGAACATCCAAAGGCGAAGATCACAACAATCTCAACCGGTTGGGAGCTATCTTGGGCTGTGTACTGATTCAAGGAAGTCTGGAGTTGAGGTTGAAATAAACAGGCTGAGGAAGGAGAGGAGCATGTTAATGAAAGAGGTGGTTGATTTGCAGCAACAACAGCGAAGAACGGTTCACCATGCTGGAGAAGTGAATCAGAGGCTCCAATCTGCAGAGCAAAGGCAGAAACAAATGGTTTCTTTCTTGGCCAAATTATTTCAAAACCCGGCCTTTCTAGCTCGACTTACGCTTAAGAAGGAACAAAAGGAGATAGATTCCCCAAGAGTTAGAAGGAAGTTTGTTAAGCAGCACCAGCCTGAAGTTGGAACATCAGAGACTATGAAAGAAGGGCATATTGTGAGGTACCAACCTGATTGGAGAAATATAACTATCTCTCCGGAAACTCCAGAAGTTACTCCAGGTTCCATTGAACACTCACCTCACTACCTTTCGCAGGATTTGGCAACAGAAATTAATGCAGACACCAAAAATCTGACTCAACAAATTCAGAATATAGTAACAGATGAGTTGGCTGCAGTGCAAGATATCATGCCAACTCAAAAAATCATTGAAGGATCATCTAGCTTTGGACTTAAAGATCACCTTTTCAAAGGGAAAAATGTCATGAGCCCAAATGAAGAAGTTTTTCCGGAGTATTTTGTTTCCTTTCCGGAGTTTCCCCCTCTTGGAACTGAAAGCATTATCAAGCAAGAAGACATATGGGACCCTGACTTCAATATTAGTGGTGCTGCTTCAAGCTGTGGGAATGATCTATGGGGTAATCCTATCAATTACCATGTTCCAGAATTTGAAGTGACAAGTGGCATATCAGACTTCTGGGACATTGGCTCAGGAAGTTTCGGCATCGATAAGTGGCTGGTTGATGATGAAACTCCTTTTGATGAAACAGTTACTCGAGCTGGTCAGCGAAAAGATGATAGATCTAAGAATGATCCATAA 1533 0.424 MDTNKKNSCNSNGKGLAESETSQLGSEQFASAFDATAFSEHFNSSLMDFEVFSTLMNTPPMQPSSQEFENIGMPVSVSSLPEPLDCLKGNMVPSFLSKTFDLVDDPGSDRIISWGANGASFVVWDPLEFSRFVLPRNFKHNNFSSFVRQLNTYGFRKIDTDKWEFFNEAFQRGKKHLLKNIQRRRSQQSQPVGSYLGLCTDSRKSGVEVEINRLRKERSMLMKEVVDLQQQQRRTVHHAGEVNQRLQSAEQRQKQMVSFLAKLFQNPAFLARLTLKKEQKEIDSPRVRRKFVKQHQPEVGTSETMKEGHIVRYQPDWRNITISPETPEVTPGSIEHSPHYLSQDLATEINADTKNLTQQIQNIVTDELAAVQDIMPTQKIIEGSSSFGLKDHLFKGKNVMSPNEEVFPEYFVSFPEFPPLGTESIIKQEDIWDPDFNISGAASSCGNDLWGNPINYHVPEFEVTSGISDFWDIGSGSFGIDKWLVDDETPFDETVTRAGQRKDDRSKNDP* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1151 510 Pfam HSF-type DNA-binding 95 184 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan20g1151 510 Gene3D - 88 185 IPR036388 -
Lan20g1151 510 PRINTS Heat shock factor (HSF) domain signature 95 118 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan20g1151 510 PRINTS Heat shock factor (HSF) domain signature 133 145 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan20g1151 510 PRINTS Heat shock factor (HSF) domain signature 146 158 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan20g1151 510 SMART hsfneu3 91 184 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan20g1151 510 MobiDBLite consensus disorder prediction 1 21 - -
Lan20g1151 510 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-3 81 502 - -
Lan20g1151 510 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 81 502 IPR027725 -
Lan20g1151 510 ProSitePatterns HSF-type DNA-binding domain signature. 134 158 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan20g1151 510 SUPERFAMILY "Winged helix" DNA-binding domain 91 184 IPR036390 -
Lan20g1151 510 Coils Coil 204 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1151 Lan-Chr20 15697793 15700652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1151 68 461 HSF AT5G03720 46.782 2.20e-99 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lan20g1151 HSF_DNA-bind 4.1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1151 K09419 - gmx:100780835 577.015