Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1148 ATGGAAATGGAAGATCATCATCACCATAACCATGACCATCAACAACAACAGTATGCCATAACTGATCTCATGCAACTCATGACTGGACCAAGGTCACTCCATTTCCCTTCCATACCATTACCAACAGCCACCCAACCCACGGCGGCTGAGCTTTTTCCCGGCTACCACCGGAATCTGATACCCCACCACCATCAACACTACGAGATGATGATGTTTGGTCGTGACATCATGCATCCATCATGTAATATTCATGACTTTGCTTCCACTGATTCTGTTGCTCCTCCTACAGCCACCACTGCTGCCACCACTAGTGCTTCAACTCCTCCTCTTAGTGGTGGCTTAGAGGTTGAGAACGGTTGCTGCATCGGTGGAGATGCATCCACTGGAAGATGGCCAAGACAAGAAACCCTCACTCTTCTTGATATCAGATCTCAGCTTCACCCTAAGTTCAAAGAGGCTAATTCAAAGGGACCCTTGTGGGATGAAGTGTCTAGGATCATGTCTGAAGACCATGGATATCAAAGGAGTGGAAAAAAGTGCAAGGAGAAGTTTGAGAATCTCTACAAATATTACAAGAAAACAAAGGATGGAAAAGCTGGAAGACAGGATGGAAAGCATTACAGATTCTTTCGCCAACTTGAAGCCTTATATGGAGAAAACATTAACCATTTCTCAGTTCCAGAAACCAACTTTGGTACCAACATTCGTTTAGAGACAAGCAGCATTAACACTCAGTCTCAAACAAATCTTCAAAATTTTAGCCTCGGTCTCACTAACTCCACTGACTTCGAGACATCATTAACAGATAATGATGGCATTGATCATAATAATGATAGCATTGACGGACTTATGGAGATTAATAATGGGTCAATGTTGGAGAAGAGAAAAAATGAAAGGAAGAGTAGAAAGTGCTGGAAGGTGAAGATAAAAGACTTCATTGACTCACAGATAAGGAAGCTCGTAGAGAAGCAAGAGGAATGGTTAGATAAACTTGTAAAGACAATGGAGCAGAAGGAAAAGGAGAGGGTGTTGAGAGAAGAAGAGTGGAGGAAACAAGAGGTGAATAGGTTAGAGAGGGAGCACAAATTTTGGGCTAAAGAGAGAGCATGGATTGAAGCAAGAGATGCTGCTTTAATGGAAGCTTTGCAAAAGGTATCAGGAGGAGAAATAAAAGGTAGTGAAGCTCATGAGGGTGTTGAAATAGCAGCTGAGAAGAGAATCAACAGTGAAAACCAGAGTGGAGATGGAAGTGAAATTCTGAATAGCAGTGTCAAAGTTGGTGATAACTGGCAAGAACATGAGACTACAAGGCTTCAAGAGTTGAGAACTGAGGTGGAGACATGGGAGGAAGTTGCAAACAAAATGGCTTGTTATGGATATGAAAGAACTCCTTTGATGTGCAAAGAGAAATGGGAGAATATTAGCAGCAACAATGCCAAGATAGGAAACAAGAAAAGGAAGGAAAACTCAAGTTGTTTTTACTTTGAAAACAATGATCAATCTTCCTTATACAATCAAGGAAATGCCTATTGTGATATCAATGATCAAAGGCCTCAAATAAAAGATGGTTCATCACCTTCAAATTCCAAGGTTGGTCATGCTGACCCTTGCTTTCCCTTCTTGATGAGTGAGGGAGGAAATTTGTGGGAGAATTATGGGTTAAAGATCAATAAATCAAACCAAAATCATTGA 1692 0.4131 MEMEDHHHHNHDHQQQQYAITDLMQLMTGPRSLHFPSIPLPTATQPTAAELFPGYHRNLIPHHHQHYEMMMFGRDIMHPSCNIHDFASTDSVAPPTATTAATTSASTPPLSGGLEVENGCCIGGDASTGRWPRQETLTLLDIRSQLHPKFKEANSKGPLWDEVSRIMSEDHGYQRSGKKCKEKFENLYKYYKKTKDGKAGRQDGKHYRFFRQLEALYGENINHFSVPETNFGTNIRLETSSINTQSQTNLQNFSLGLTNSTDFETSLTDNDGIDHNNDSIDGLMEINNGSMLEKRKNERKSRKCWKVKIKDFIDSQIRKLVEKQEEWLDKLVKTMEQKEKERVLREEEWRKQEVNRLEREHKFWAKERAWIEARDAALMEALQKVSGGEIKGSEAHEGVEIAAEKRINSENQSGDGSEILNSSVKVGDNWQEHETTRLQELRTEVETWEEVANKMACYGYERTPLMCKEKWENISSNNAKIGNKKRKENSSCFYFENNDQSSLYNQGNAYCDINDQRPQIKDGSSPSNSKVGHADPCFPFLMSEGGNLWENYGLKINKSNQNH* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1148 563 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 38 554 - -
Lan20g1148 563 MobiDBLite consensus disorder prediction 91 111 - -
Lan20g1148 563 CDD GT1 130 195 - -
Lan20g1148 563 SUPERFAMILY Homeodomain-like 424 488 IPR009057 -
Lan20g1148 563 Pfam Myb/SANT-like DNA-binding domain 130 216 IPR044822 -
Lan20g1148 563 Pfam Myb/SANT-like DNA-binding domain 430 500 IPR044822 -
Lan20g1148 563 ProSiteProfiles Myb-like domain profile. 123 188 IPR001005 -
Lan20g1148 563 SMART sant 345 477 IPR001005 -
Lan20g1148 563 SMART sant 127 190 IPR001005 -
Lan20g1148 563 Coils Coil 321 348 - -
Lan20g1148 563 Gene3D - 131 193 - -
Lan20g1148 563 Gene3D - 428 480 - -
Lan20g1148 563 PANTHER - 38 554 - -
Lan20g1148 563 ProSiteProfiles Myb-like domain profile. 429 475 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1148 Lan-Chr20 15627825 15631340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1148 14 558 Trihelix Transcription Factor Family AT5G03680 40.894 2.17e-118 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lan20g1148 Myb_DNA-bind_4 4e-19 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1176 8 16566263 16570254 Lan20g1148 20 15627825 15631340 LSH
Lan19g0402 19 5211012 5217094 Lan20g1148 20 15627825 15631340 PCT
Lan20g1148 20 15627825 15631340 Lan19g0402 19 5211012 5217094 PCT