Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1147 ATGGAGAAACGAAAAGCTGGAAGGAAGAAATTCCATGAAACTAGACACCCAATCTATAAAGGTGTGAGACAAAGAAATGGGAAATGGGTATGTGAGTTAAGACAACCTAATAACAAAACTCGTGTATGGCTTGGAACTTTTGCTCACCCAGACATGGCAGCTATAGCATATGATGTTGCAGCTTTGGCTTTCAAAGGAGACACTGCTTCCTTAAATTTCCCTAACACAGCAACCTTGTTACCACGCCTTAACTCACAAACTTCTTCCATTAGAGCCATTCAGTTTGCTGCAATGAAAGCAGCTCAGAAACACTTTACAAGAGAGTTGAAACCCAAAGAGATTGGTGCTAGAAATTGTTCTGAGTTGTTGTGTTCGGTTGATGAAATGGGTTTAGAGGGAGGTTCTAGAAGCTTCTTTTGGGATGAAGAAGAGGTTTTTAACATGCCAGGGTTGATGAATAGCATGGCAGAAGGGTTGATTATCACACCACCAGCTTTGCAGAGAGGATTCAACTGGGTTGGTGGGGAAACTTTTGTGGACTTGACTCTCTGGGGAGACTAA 561 0.4225 MEKRKAGRKKFHETRHPIYKGVRQRNGKWVCELRQPNNKTRVWLGTFAHPDMAAIAYDVAALAFKGDTASLNFPNTATLLPRLNSQTSSIRAIQFAAMKAAQKHFTRELKPKEIGARNCSELLCSVDEMGLEGGSRSFFWDEEEVFNMPGLMNSMAEGLIITPPALQRGFNWVGGETFVDLTLWGD* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1147 186 CDD AP2 17 76 IPR001471 GO:0003700|GO:0006355
Lan20g1147 186 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 7 184 - -
Lan20g1147 186 SUPERFAMILY DNA-binding domain 18 75 IPR016177 GO:0003677
Lan20g1147 186 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 184 - -
Lan20g1147 186 SMART rav1_2 18 80 IPR001471 GO:0003700|GO:0006355
Lan20g1147 186 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Lan20g1147 186 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Lan20g1147 186 ProSiteProfiles AP2/ERF domain profile. 18 74 IPR001471 GO:0003700|GO:0006355
Lan20g1147 186 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Lan20g1147 186 PRINTS Ethylene responsive element binding protein signature 56 76 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1147 Lan-Chr20 15501655 15502516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1147 3 185 AP2-EREBP Transcription Factor Family AT4G25470 45.699 1.10e-43 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan20g1147 AP2 2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1147 - - aprc:113870892 291.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0282 5 3925827 3926390 Lan20g1147 20 15501655 15502516 PCT
Lan19g0401 19 5149161 5150269 Lan20g1147 20 15501655 15502516 PCT