Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1144 ATGTCAGAACCCGCCACCGCCGACACCGTTCCCCCAACACCGCCGCCACGGGCTCATAAAAGTTGGGCCGACGAAGCAGACGACGAAGCTGCCGAAGATTCCAACGCAACGGCGTCGTCTAGTTCAGCAACACCACAAACCTCATCACTAAACGAATTAACCATCGATGGGAACAAGAAACCGTCGAAGCACTTGGATGACCCCGAGGATTCCAACATCCAAACGGTTACGAGTGGCGAAACGCCGTACACGTCTGCGGCAACGTTCGAGGAATTGAATCTCTCGCCGGAGCTGCTGAAGGGTTTATATGTGGAGATGAAATTTCAGAAGCCTAGTAAAATTCAAGCTATTAGTTTGCCAATGATTTTGAACCCTCCTCATAGGGATTTGATTGCACAGGCGCATAATGGTTCTGGAAAAACAACGTGTTTCGTGCTTGGGATGCTTAGCCGTGTTGATCCTAAGCTTCAGACTCCTCAAGCTCTCTGTATTTGCCCAACTAGGGAGTTGGCTATTCAGAATACTGAAGTTCTGCAAAAGATGGGGAAGTATACGGGGATCAGTTCTGAATGTGCCATTCCAACAGACAGTAGGGTCGATCTTCCTATAGCGAAACGGGCGCCGATTATGGCCCAAGTGATTATTGGGACTCCAGGCACAATAAAGAAGTGGATGACTTTTAAGAAACTGGGTGTAACCAGATTAAGGATACTTGTTTTTGATGAGGCTGATCAAATGCTTGCTGAGGATGGTTTTAAAGATGATTCCTTGAGGATAATGAAAGAGATAGAAAAATTCAATTCTAACTGTCAGGTTCTTTTGTTTTCTGCCACATTCAATGACATTGTCAAGAATTTTGTTTCAAGGACAGTTAAGAAGGATCATAATAAACTTTTTGTGAAGAAAGAAGAACTATCTTTAGATGCAGTGAAGCAGTACATAGTGCGCTGTCCTGATGAACTCTCTAAGATTGAAGTCATAAAAGATTACATATTTGAAATAGGAGAAAACGTGGGGCAAACTATTATATTTGTGCGTACAAGAGAAAGTGCAAAAATGTTGCATCAAGCACTTGTTGCTTTTGGCTATGAGGTTACTTCCATACAAGGTGCTCTTAGTCATGAGGAGAGAGACAAAATTGTTAAGGAGTTCAAAGATGGTTTAACTCAAGTTCTTATATCAACTGATGTTCTTGCCCGAGGCTTTGATCAACAACAGATTAATTTGGTTATCAATTATGATCTTCCACTGAAACATACTGCTGAGCATACCCGTGAACGCGAGCCTGATTATGAGGTTTATTTGCACAGGGTTGGTAGGGCTGGACGTTTTGGGCGCAAGGGGGCTGTATTTAACCTGATATGTGATGAAAGGGATGAAAAGCTTATGAAAAAGATTGAGAACCACTTTGGCACCCATGTGACAGAGGTACAGAGAAACAGTGTTGAAGACTATAAAGGTGCTCTGAAGGAGGCTGGTTTACTGCAATGA 1491 0.4319 MSEPATADTVPPTPPPRAHKSWADEADDEAAEDSNATASSSSATPQTSSLNELTIDGNKKPSKHLDDPEDSNIQTVTSGETPYTSAATFEELNLSPELLKGLYVEMKFQKPSKIQAISLPMILNPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPKLQTPQALCICPTRELAIQNTEVLQKMGKYTGISSECAIPTDSRVDLPIAKRAPIMAQVIIGTPGTIKKWMTFKKLGVTRLRILVFDEADQMLAEDGFKDDSLRIMKEIEKFNSNCQVLLFSATFNDIVKNFVSRTVKKDHNKLFVKKEELSLDAVKQYIVRCPDELSKIEVIKDYIFEIGENVGQTIIFVRTRESAKMLHQALVAFGYEVTSIQGALSHEERDKIVKEFKDGLTQVLISTDVLARGFDQQQINLVINYDLPLKHTAEHTREREPDYEVYLHRVGRAGRFGRKGAVFNLICDERDEKLMKKIENHFGTHVTEVQRNSVEDYKGALKEAGLLQ* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1144 496 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 87 116 IPR014014 GO:0003724
Lan20g1144 496 Gene3D - 66 304 IPR027417 -
Lan20g1144 496 Gene3D - 307 489 IPR027417 -
Lan20g1144 496 CDD SF2_C_DEAD 310 454 - -
Lan20g1144 496 CDD DEADc_DDX19_DDX25 94 293 - -
Lan20g1144 496 Pfam Helicase conserved C-terminal domain 323 445 IPR001650 -
Lan20g1144 496 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 66 475 - -
Lan20g1144 496 MobiDBLite consensus disorder prediction 1 82 - -
Lan20g1144 496 Pfam DEAD/DEAH box helicase 113 285 IPR011545 GO:0003676|GO:0005524
Lan20g1144 496 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 121 297 IPR014001 -
Lan20g1144 496 MobiDBLite consensus disorder prediction 33 56 - -
Lan20g1144 496 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 326 493 IPR001650 -
Lan20g1144 496 PANTHER DEAD-BOX HELICASE DBP80 66 475 - -
Lan20g1144 496 SMART ultradead3 107 313 IPR014001 -
Lan20g1144 496 SMART helicmild6 352 445 IPR001650 -
Lan20g1144 496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 463 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1144 Lan-Chr20 15376964 15388920 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1144 80 480 Eukaryotic Initiation Factors Gene Family AT1G72730 35.610 3.62e-70 228