Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1100 ATGGATGAAATTGAAGTTCCTCAATATTTCATATGCCCAATATCCCTTCAAATCATGAAGGACCCTGTTACTGCTACAACAGGCATAACATACGACCGAGACAGCATTGAACAATGGCTATACTCAAACCAGAACACAACATGCCCATATACCAAACAACCCTTAACAAGAGACTCTGACTTAACCCCGAATCACACTCTTCGTCGTTTGATCCAAGCTTGGTGCACCCAAAATGCTTCACTTGGCATTGATCCAATACCAACACCCAAGTCACCACTTAACAAGGTTCAAGTCCTCAGGCTCCTAAAAGAGCCAAAGTTGAAGCTCAAAAGTTTAAGGCAGTTGGAACTTTTCGCGGCTGAGAACGAACGGAATAAGAAGTGTTTGCTAGAGGCTGGTGTTCCAAAGGCTATGATCTTGTTCATAGTAAATTGTTTTAGAAAAGGAGAAATTGATGAGGGTATTGAAGAAGCTCTAAGTTTGCTTCAATTTGTCAAGGTTCCTGCACAAGATGTGAAGCTGCTTGTAGAAGAAAATGATCAAATATTTGACTCTCTAACATGGGTTTTAGCCTGTGATGGAATGGAAAATTCAGTTTCTGTTAAATCACATGCTGTTTTAGTTCTCAAAAGAATCATACAGAAGAGTGACCCTTGTGTTATGGAGAGACTAAAACCAGAGTTCTTTGAAATGATTGTGAGGATTTTAAGAAATGGGATTATTACACAACATGGGTTGAATGCTGCACTTCATGTTCTGTTACGTGCTTGTCCTTGGGGACGAAATAGGGTCATGATGGTTGAATCTGGTGCTGTATTTGAACTCATAGAGATTGAATTGAACACACCAGAAAAGAGAATCACAGAACTAACTCTAGCTATACTATTTCACCTTTGTTGTTGTGCTGATGGTAGAGCTCAGTTTCTGAGTCACAAAGGATCAATAGCAATGTTAACTGAGAGAATCTTGAAGGTTTCGGTCACTGTGGATGATAGAGCCATATTTACGCTCTCTTTGATATCCAAATTCTCGGTCACACAAATGGTGTTACAGGAAATGTTGCAGGTTGGAACTGTGTCAAAGCTTTGCATGTTGCTTCAAGCTGATCATGCTAAATATCTTAAAGACAAAGCATTGGAAATATTAAAGTCTCACTCTGAGGTTTGGAAGAATTCTCCTTGTTTTCCTGATCGGTCTTTTTATGCAAGCTTGCATATGGGAATCAATGCAGTGTAA 1236 0.3948 MDEIEVPQYFICPISLQIMKDPVTATTGITYDRDSIEQWLYSNQNTTCPYTKQPLTRDSDLTPNHTLRRLIQAWCTQNASLGIDPIPTPKSPLNKVQVLRLLKEPKLKLKSLRQLELFAAENERNKKCLLEAGVPKAMILFIVNCFRKGEIDEGIEEALSLLQFVKVPAQDVKLLVEENDQIFDSLTWVLACDGMENSVSVKSHAVLVLKRIIQKSDPCVMERLKPEFFEMIVRILRNGIITQHGLNAALHVLLRACPWGRNRVMMVESGAVFELIEIELNTPEKRITELTLAILFHLCCCADGRAQFLSHKGSIAMLTERILKVSVTVDDRAIFTLSLISKFSVTQMVLQEMLQVGTVSKLCMLLQADHAKYLKDKALEILKSHSEVWKNSPCFPDRSFYASLHMGINAV* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1100 411 PANTHER WDSAM1 PROTEIN 3 400 IPR045185 GO:0061630
Lan20g1100 411 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 400 - -
Lan20g1100 411 SUPERFAMILY ARM repeat 103 380 IPR016024 -
Lan20g1100 411 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Lan20g1100 411 SUPERFAMILY RING/U-box 3 84 - -
Lan20g1100 411 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Lan20g1100 411 Gene3D - 95 392 IPR011989 -
Lan20g1100 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Lan20g1100 411 CDD RING-Ubox_PUB 10 53 IPR045210 -
Lan20g1100 411 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1100 Lan-Chr20 13813503 13814898 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1100 2 395 U-box Gene Family AT3G11840 42.500 2.26e-116 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1100 - - gmx:100798446 589.341