Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1097 ATGAACGACTTGTTCTCTCGCTTACACAGCGATCGTGCCTCACCGGACCGCCACCACGTGATTGAGATGTCCACCGCCGCCACCGACGCCGCCGCTCCCTCCGGCGGAGGAGTGAACCTGGACAAGTTCTTCGATGACGTGGAAGGTGTTAAAGATGAGCTGAAGGAGCTTGATCAGATAGCTAAGAGCCTTCAAAACAGCAACGAACAGAGCAAGACGCTTCACGACGCGAAGAGCGTGAAGGACTTGCGTTCCCGCATGGACGACGACGTTTCACTCGCACTCAAGAAGGCTAAGGTTGTTAAAATCCGGCTGGAGGCGTTGGAGCGATCCAACGCCGCGAACCGGAGTTTGCCAGGATGTGGACCGGGTTCATCCTCAGATCGAACCCGGACATCCGTGGTAATTGGGTTGAAGAAGAAGCTTAAGGACTCTATGGAGAGCTTTAATGAGGTTCGGCAGCTGATCTCGTCGGAGTATAGGGACACCGTGCAGCGACGGTACTTCAACGTCACCGGAGAGAATCCCGATGAGAAGACTCTTGATCGATTGATCTCTACAGGTGAGAGTGAGACCTTCCTTCAGAAAGCCATCCAAGAACAAGGCCGCGGTAGAATTCTGGACACTATCAATGAAATTCAAGAGAGGCATGATGCCGTGAAAGACTTGGAGAAGAATCTCCTGGAGTTGCATCAAGTGTTCCTTGATATGGCGGTGTTGGTGGAATCGCAAGGTGAGCAATTGAATGACATTGAGAGTCATGTGGCACGAGCTCACTCATTCGTGCAAACTGGAGTTGAGCAGTTACACACTGCACGGAAGCACCAGAGAAGCACCAGGAAATGGACCTGTTATGCTATTATACTTATTCTGGTGATAGTCTTGTTTGTTGTGCTCTTCACTGTTAGACCATGGGAAAAAAAGGGTAGTAGCGGCAATGGTGGTAATCAGCCTGCTTCTGCTCAAACACCTCCACTTTCTCCCCCTCCTCCTACGGCTTAA 1002 0.512 MNDLFSRLHSDRASPDRHHVIEMSTAATDAAAPSGGGVNLDKFFDDVEGVKDELKELDQIAKSLQNSNEQSKTLHDAKSVKDLRSRMDDDVSLALKKAKVVKIRLEALERSNAANRSLPGCGPGSSSDRTRTSVVIGLKKKLKDSMESFNEVRQLISSEYRDTVQRRYFNVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKDLEKNLLELHQVFLDMAVLVESQGEQLNDIESHVARAHSFVQTGVEQLHTARKHQRSTRKWTCYAIILILVIVLFVVLFTVRPWEKKGSSGNGGNQPASAQTPPLSPPPPTA* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1097 333 Gene3D - 38 170 - -
Lan20g1097 333 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 9 310 - -
Lan20g1097 333 SMART tSNARE_6 205 272 IPR000727 -
Lan20g1097 333 SUPERFAMILY t-snare proteins 38 265 IPR010989 GO:0016020|GO:0016192
Lan20g1097 333 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 210 272 IPR000727 -
Lan20g1097 333 Coils Coil 47 74 - -
Lan20g1097 333 CDD SNARE_syntaxin1-like 209 269 - -
Lan20g1097 333 CDD SynN 40 197 IPR006011 GO:0016020
Lan20g1097 333 MobiDBLite consensus disorder prediction 307 333 - -
Lan20g1097 333 Gene3D - 206 303 - -
Lan20g1097 333 Pfam SNARE domain 246 298 IPR000727 -
Lan20g1097 333 Pfam Syntaxin 42 245 IPR006011 GO:0016020
Lan20g1097 333 ProSitePatterns Syntaxin / epimorphin family signature. 216 255 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lan20g1097 333 SMART SynN_4 35 161 IPR006011 GO:0016020
Lan20g1097 333 PANTHER SYNTAXIN 9 310 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1097 Lan-Chr20 13595687 13598657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1097 31 329 SNARE and Associated Proteins AT3G11820 70.227 6.27e-147 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1097 K08486 - gmx:100809258 482.256