Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1094 ATGAGCAACACAACTGATGCCTCAGGATTTCTTGGTTCCAACAACATCAATGGCTTTGGCTATGGCATAGGAATTTCAATTGGAATTCTCCTGCTCATCGTAACCATTACACTTACCTCCTATTTCTGCACCCGAATACAGGTACCATCTGCTCCTACCCGAAGGAGAGACATCCCTGATCTCCTAGAACCAGAACACTCAATAATAGATGTGGGGCTAGATGAATCAACAATTTTGAGTTACCCAAAGATGATGTACTCTGAAGCCAAGCTTAGGAAATCGGATTGGACAGCAACATGCTGCTCCATATGTCTTTCAGATTACAAGGCTACTGATATGCTTCGGGTATTGCCAGATTGTGAGCATCTCTTCCATCCAAAGTGCATAGACCCATGGTTGAGGTTGCATCCTACATGTCCAGTTTGCAGAACATCTCCCTTACCAACACCACTCTCAACGCCTCTGGCTGAGGTGGTTCCTTTAGCAAACAGGCGAGATTGA 501 0.4511 MSNTTDASGFLGSNNINGFGYGIGISIGILLLIVTITLTSYFCTRIQVPSAPTRRRDIPDLLEPEHSIIDVGLDESTILSYPKMMYSEAKLRKSDWTATCCSICLSDYKATDMLRVLPDCEHLFHPKCIDPWLRLHPTCPVCRTSPLPTPLSTPLAEVVPLANRRD* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1094 166 Pfam Ring finger domain 101 143 IPR001841 -
Lan20g1094 166 CDD RING-H2_PA-TM-RING 100 143 - -
Lan20g1094 166 SMART ring_2 101 142 IPR001841 -
Lan20g1094 166 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 164 IPR045899 -
Lan20g1094 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 147 IPR013083 -
Lan20g1094 166 PANTHER RING-H2 FINGER PROTEIN ATL70-LIKE 5 164 - -
Lan20g1094 166 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Lan20g1094 166 SUPERFAMILY RING/U-box 82 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1094 Lan-Chr20 13387764 13388917 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1094 2 163 C3H Transcription Factor Family AT2G35910 61.446 1.31e-57 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1094 - - gmx:121172638 224.942