Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1076 ATGACAACTTCATGGGCTGATTCTGCTGACCATTCAGCCAATGCCTCTGCACGGCCGGCTTATCTTCCTCCACATCTTCGCAACCGGACTTTGTCTTCAGAACCCCCAGCTGCTGCAACATCCTACTTGTCTTCATTGGGGGGTAGTGATCGTGGGAATTATGGCAGTCTGGCTGCTGGTTTTCATGGGGGTATTTCCTCTAAGCCTGATCTCGGGCAGCAGGGATATGGTTCTAATGTTCAGACCGGTGGTGGTGGCGGTGGCTGGAATGGTAGAGGGGTAGGGAGGGACCGTGGAAGGCGTGAGGTGAACCCTTTTGAGAATGATGAACCTGTGGATCAATTTTCCCATGAGCAAGAAAACACAGGGATTAACTTTGATGCTTATGATGATATCCCTGTGGAGACTAGTGGGGGTAATGTGCCTCCACCTGTAAATACATTCGCGGAAATAGACTTGGGTGAGGCGTTGAATCAAAACATACAGAGGTGCAAGTATGTCAAACCAACTCCGGTTCAGAGGTATGCCATACCGATTTCTCTCGCGGGGAGAGATTTGATGGCATGTGCTCAGACAGGGTCTGGAAAGACAGCTGCCTTTTGCTTTCCTATTATAAGTGGAATCATGAGGGAGCAGTGTGTTCAAAGACCACGTGTAGCCCGAACTGCTTTCCCTATGGCGCTTATCCTCTCCCCTACTCGGGAGCTTTCATGCCAGATACATGATGAGGCCAAAAAGTTTTCTTATCAAACTGGTGTCAAGGTGGTAGTTGCTTATGGAGGAGCACCAATCAACCAACAGTTGCGGGAGCTGGAGAGAGGAGTTGATATTCTGGTAGCAACTCCAGGACGATTGGTGGATTTGCTTGAGAGGGCTAGGGTGTCACTGCAAATGATAAGATATTTGGCTCTTGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAAGATAGTTGAACAGATGGACATGCCTCCTCCTGGCATGAGACAGACTTTGCTGTTTAGTGCCACATTTCCCAAAGAGATACAGGGGCTTGCATCAGATTTTCTTTCAAATTACGTGTTTCTGGCTGTTGGAAGGGTTGGTTCAAGTACTGATCTAATTTCTCAAAGAGTAGAATATGTGCTTGAGTCAGACAAGAGAAGCCACCTCATGGACCTTCTCCATGCTCAGAGGGAAAATGAAAGTAATGGCAAGCAATGTCTGACATTAGTTTTTGTGGAAACAAAGAAAGGAGCTGATGCATTGGAGCACTGCTTGTGTGTTAATGGATTTCCTGCAACTAGCATTCATGGTGACAGAACACAGCAAGAAAGAGAACTAGCATTGAGGTCATTCAAGAGTGGAAACACACCAATTTTAGTGGCCACAGATGTTGCAGCACGTGGCCTTGACATTCCACGGGTAGCACATGTGGTAAATTTTGATCTTCCGAATGACATTGATGATTATGTGCATCGGATAGGAAGAACAGGGCGAGCTGGGAAAGTGGGGTTAGCAACAGCCTTCTTCAATGACAGTAATTTGTCCATGGCCAAACCATTGGCTGATCTGATGCAAGAGGCAAATCAAGAAGTACCTGTTTGGCTCACACGTTATGCAGCAAGGGCTTCTTACGGTGGTGGCAACAGAAACAGGCGGTCAGGGGGAGGAGCCCGTTATGGTGGCCGCGATTTTAGGAAGGAGGGCTCATTTAATAAAGGAGCAGATTACAATGGTGGAACAGGTGGGTATGGGGTTCCTGCCAATTATAGTGGAGGGTATGGTCAAGGTGTGACTAGTGCTTGGGATTAG 1809 0.4748 MTTSWADSADHSANASARPAYLPPHLRNRTLSSEPPAAATSYLSSLGGSDRGNYGSLAAGFHGGISSKPDLGQQGYGSNVQTGGGGGGWNGRGVGRDRGRREVNPFENDEPVDQFSHEQENTGINFDAYDDIPVETSGGNVPPPVNTFAEIDLGEALNQNIQRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMREQCVQRPRVARTAFPMALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQGLASDFLSNYVFLAVGRVGSSTDLISQRVEYVLESDKRSHLMDLLHAQRENESNGKQCLTLVFVETKKGADALEHCLCVNGFPATSIHGDRTQQERELALRSFKSGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKVGLATAFFNDSNLSMAKPLADLMQEANQEVPVWLTRYAARASYGGGNRNRRSGGGARYGGRDFRKEGSFNKGADYNGGTGGYGVPANYSGGYGQGVTSAWD* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1076 602 Gene3D - 102 363 IPR027417 -
Lan20g1076 602 Gene3D - 364 544 IPR027417 -
Lan20g1076 602 SMART helicmild6 419 500 IPR001650 -
Lan20g1076 602 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 146 174 IPR014014 GO:0003724
Lan20g1076 602 SMART ultradead3 165 376 IPR014001 -
Lan20g1076 602 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 177 361 IPR014001 -
Lan20g1076 602 CDD DEADc_DDX3_DDX4 147 367 IPR044763 GO:0003724|GO:0005524
Lan20g1076 602 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 388 539 IPR001650 -
Lan20g1076 602 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 226 517 IPR027417 -
Lan20g1076 602 Pfam Helicase conserved C-terminal domain 384 500 IPR001650 -
Lan20g1076 602 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED 46 574 - -
Lan20g1076 602 CDD SF2_C_DEAD 373 509 - -
Lan20g1076 602 MobiDBLite consensus disorder prediction 1 44 - -
Lan20g1076 602 Pfam DEAD/DEAH box helicase 170 348 IPR011545 GO:0003676|GO:0005524
Lan20g1076 602 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 46 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1076 Lan-Chr20 12545116 12551722 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1076 130 533 Eukaryotic Initiation Factors Gene Family AT3G19760 30.941 1.60e-61 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1076 K11594 - gmx:100800039 906.746