Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1073 ATGAGGGGCAGAAGCTACAGTTACAGCCCGTCACCATCTCCAAGGAGGTACAGCCGAAGAGGGCGGAGTCCAAGCCCAAGGGGACGTTATCGCGGCCGTGATAGGGATTTACCAACAAGTCTTCTTGTTCGGAACCTCCATAAAGATTGCAGGGCGGAAGATTTAAGGGCTCCATTTAGCCACTTTGGTCCTCTCAAGGATGTTTACCTGCCTCGAGATTATTATACTGGGGAGCCACGTGGTTTTGGGTTTGTTCAATATTTAGATCCAGATGATGCTGCAGATGCGAAATATCATATGGATGGTCAAATTCTTCTTGGTCGTGAGATAACTGTGGTGTTTGCAGAGGAAAACAGAAAGAAACCTGCAGAAATGAGAGCAAGAGAACGTGGAAGGTCATATGATTATAGAAGTTCTCCACGCCATTATTCCCGTTCACCGCGGTATGGGCAATATTCACATAGTCCAGGCTATTCACCTTCTCCACGAGGAAGGCATTATTCCAGGTCCATTTCACCAAGAGACAGAAGGTATCGGGGGCGATCATATTCCAGATCACCTTATGGATCAAGAAGCCGCAGTTGA 585 0.4735 MRGRSYSYSPSPSPRRYSRRGRSPSPRGRYRGRDRDLPTSLLVRNLHKDCRAEDLRAPFSHFGPLKDVYLPRDYYTGEPRGFGFVQYLDPDDAADAKYHMDGQILLGREITVVFAEENRKKPAEMRARERGRSYDYRSSPRHYSRSPRYGQYSHSPGYSPSPRGRHYSRSISPRDRRYRGRSYSRSPYGSRSRS* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1073 194 SMART rrm1_1 40 113 IPR000504 GO:0003723
Lan20g1073 194 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 188 - -
Lan20g1073 194 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A 1 188 - -
Lan20g1073 194 MobiDBLite consensus disorder prediction 168 182 - -
Lan20g1073 194 MobiDBLite consensus disorder prediction 144 158 - -
Lan20g1073 194 MobiDBLite consensus disorder prediction 1 18 - -
Lan20g1073 194 MobiDBLite consensus disorder prediction 120 142 - -
Lan20g1073 194 MobiDBLite consensus disorder prediction 120 194 - -
Lan20g1073 194 MobiDBLite consensus disorder prediction 1 36 - -
Lan20g1073 194 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 111 IPR000504 GO:0003723
Lan20g1073 194 SUPERFAMILY RNA-binding domain, RBD 39 145 IPR035979 GO:0003676
Lan20g1073 194 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
Lan20g1073 194 Gene3D - 33 194 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1073 Lan-Chr20 12429609 12432710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1073 33 102 Eukaryotic Initiation Factors Gene Family AT3G11400 40.000 8.50e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1073 K12900 - jre:108985117 216.083