Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1072 ATGGCTTCAAGATTTTGGACTCAGGGTGGTAGTGATTCTGAGGAGGAGGAGAGTGACTATGATGAGGAGGTTGTGGCAACAGCGGGTGAATCTGCTAGTCAAGCCGTTGCAAGCAAATACATGGATAATGGCAGCGATAGTGATGACTCAGATGGCCAAAAGCGTACTGTCAGGTCAGCAAAAGACAAACGTTTTGATGAGATGTCATCGACTGTTGATCAGATGAAGAATGCCATGAAGATTAATGACTGGGTAAGTTTACAGGAGAGCTTTGACAAGATCAACAAGCAACTTGAGAAAGTCATGCGTGTTATTGAATCTGCAAAGGTGCCCACTCTTTATATAAAGGCACTTGTAATGTTGGAGGATTTCTTAGCTCAGGCTTTGGCAAATAAGGATGCCAAAAAGAAAATGAGTAGCAGCAATGCTAAAGCCTTAAACTCAATGAAGCAGAAATTGAAGAAGAATAATAAGCAGTATGAGGATTTGATTAATAAATTTAGGGAGAATCCCGAGAGTGAGGGGGAAAAAGATGAAGAGGAGACAGAGGAAGAGTATGAAACTGATGACGAGATTATTGAACCAGAACAGCTAAAAAAGAAAGAAGCACTATCAGATTCTGAAGGTTCTCGCTATGACGACGAGAAGCAAGATCCCAATGAAACACCATGGGACCAAAAGCTTAGCAAGAAAGACAGGCTTTTGGATAGGCAATTTATGAAAGACCCAAGTGAGATCACTTGGGATATAGTTAACAAAAAGTTCAAAGAGGTTGTGGCAGCTAGGGGTAAGAAGGGAACTGGAAGGTTTGAACAGGTTGAGCAGCTTACCTTCCTAACAAAAGTTGCTAAAACACCTGCACAGAAACTGGAAATTCTTTTTAGTCTAGTTTCTGCTCAGTTTGATGTTAATCCAGGTCTTAGTGGGCATATGCCAATTAAAGTGTGGAAAAAATGCTTACAGAACATGCTAGTCATTCTTGATATTCTAGTGCAGTACCCAAACATAGTTGTTGATGATTCAGTGGAGCCAGATGAGAATGAAACTCAGAAGGGGGTGGGCTATAATGGACCCATTCACATTTGGGGTAACTTAGTTGCATTCTTAGAAAGAATAGATACTGAGTTTTTCAAGAGCCTTCAGTGCATAGATCCTCATACTTCTGAGTATGTTGAGAGACTGAGGGATGAACCCACATTTCTTGTTCTTGCTCAGAATGTCCAGGAATATCTGGCAAGGGTTGGGGATATGAAAGCAGCTTCTAAGGTAGCTTTGAGGCGAGTGGAACTCATTTACTACAAACCGCAGGAGGTTTACGATGCCATGAGAAAGTTGGCTGAGCTGACTGAAGATGGGGGTATTGGAGGGGATGCTAGTGAGGAGTCTAAAGGATTTGAAGAAACAAGGACACCTACTGCATTTGTTGTTACTCCTGAGGTTGTTCCTAGGAACCCCACTTTTCCGGAGAATAGCAGGGCCCTAATGGATATATTGGTATCCCTAATATATAAATACGGAGATGAGCGCACTAAAGCACGTGCAATGCTTTGTGATATAAATCATCATGCTCTGCTCGATGAGTTCTCAGTAGCACGTGATCTGCTGCTTATGAGCCATTTGCAGGACAGTGTTCAACAAATGGACATTTCAACACAAATACTTTTTAACAGGACTATGGCTCAGCTGGGTCTATGTGCTTTTCGGGTTGGATTGATTTCTGAGTCACATGGCTGTCTCTCTGAACTTTATTCTGGTGGCAGGGTGAGGGAATTACTTGCTCAAGGTGTGTCACAAAGTCGTTTCTATGAGAAGACCCCTGAACAGGAAAGGTTGGAAAGGAGGCGTCAAATGCCATATCATATGCACATAAACCTTGAGCTCCTAGAGGCAGTGCATCTTATTTGTGCTATGTTGCTGGAAGTCCCTAACATGGCTGCCAATGTCCATGATGCAAAGCGCAAGGTCATCAGCAAGACTTTCCGTCGTTTGCTTGAGGTTAATGAGAAACAAACTTTCACTGGTCCACCTGAAAATGTCAGAGATCATGTCATGGCTGCCACGATAGTTCTTACCAAGGGAAACTTCAACAAGGCTTTTGATATCATTCAGTCTCTTGGTGTATGGAAATTCGTTAGGAACCGTGATGCTGCACTTGGAATGCTGAAGGACCAAATCAAGGAGGAGGCACTGAGAACATACCTCTTTACATTCTCATCATCTTATGATTCTTTGAGCCTGGATCAGCTCACAAAAATGTTCGATCTCTCTGTTTCTCGCACTCATAGTATTGTTAGTCGAATGATGATCAACGAGGAGCTTCATGCAAGCTGGGACCAGCCAACTGGGTGCATTATTTTCCAGGATGTTGAGCACTCAAGGCTGCAGGGTTTGGCATTCCAGTTAACAGAGAAATTATCTATCCTTTCTGAGAGTAATGAAAGAGCAACTGAGGCAAGGATAGGCGGTGGTGGATTGGATCTGCCTCTAAGGCGACGCGATAACCAGGACTATGCTGCTGCTGCCGGTGGAGCTGCCACTTCAGGTGGTAGGTGGCAAGAGTTGTCCTTTTCTCAGCAAAGGCAAGGAGGAGGTAGTGGTCGTGGAGGATATAATACTGGTCGTGGGAGGCAATCAGCATTTGGCCAAGCTGCTGGGAGTGGCTATTCAAGGGACCGAACCGGACGAGTAACGGGTGCAGGTTATCAGAGGTCTGCTCATAGTGGATCAGCACCGAGAGGATCCCAGGTGGATGCTTCTACTCGCATGGTTAGTCTAAAGGGAGTTCGGGCTTGA 2793 0.4418 MASRFWTQGGSDSEEEESDYDEEVVATAGESASQAVASKYMDNGSDSDDSDGQKRTVRSAKDKRFDEMSSTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVIESAKVPTLYIKALVMLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEDLINKFRENPESEGEKDEEETEEEYETDDEIIEPEQLKKKEALSDSEGSRYDDEKQDPNETPWDQKLSKKDRLLDRQFMKDPSEITWDIVNKKFKEVVAARGKKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSLVSAQFDVNPGLSGHMPIKVWKKCLQNMLVILDILVQYPNIVVDDSVEPDENETQKGVGYNGPIHIWGNLVAFLERIDTEFFKSLQCIDPHTSEYVERLRDEPTFLVLAQNVQEYLARVGDMKAASKVALRRVELIYYKPQEVYDAMRKLAELTEDGGIGGDASEESKGFEETRTPTAFVVTPEVVPRNPTFPENSRALMDILVSLIYKYGDERTKARAMLCDINHHALLDEFSVARDLLLMSHLQDSVQQMDISTQILFNRTMAQLGLCAFRVGLISESHGCLSELYSGGRVRELLAQGVSQSRFYEKTPEQERLERRRQMPYHMHINLELLEAVHLICAMLLEVPNMAANVHDAKRKVISKTFRRLLEVNEKQTFTGPPENVRDHVMAATIVLTKGNFNKAFDIIQSLGVWKFVRNRDAALGMLKDQIKEEALRTYLFTFSSSYDSLSLDQLTKMFDLSVSRTHSIVSRMMINEELHASWDQPTGCIIFQDVEHSRLQGLAFQLTEKLSILSESNERATEARIGGGGLDLPLRRRDNQDYAAAAGGAATSGGRWQELSFSQQRQGGGSGRGGYNTGRGRQSAFGQAAGSGYSRDRTGRVTGAGYQRSAHSGSAPRGSQVDASTRMVSLKGVRA* 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1072 930 Pfam PCI domain 659 787 IPR000717 -
Lan20g1072 930 ProSiteProfiles PCI domain profile. 619 791 IPR000717 -
Lan20g1072 930 MobiDBLite consensus disorder prediction 900 921 - -
Lan20g1072 930 MobiDBLite consensus disorder prediction 1 69 - -
Lan20g1072 930 MobiDBLite consensus disorder prediction 849 930 - -
Lan20g1072 930 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 720 808 - -
Lan20g1072 930 Gene3D - 727 795 IPR036388 -
Lan20g1072 930 MobiDBLite consensus disorder prediction 133 229 - -
Lan20g1072 930 MobiDBLite consensus disorder prediction 174 192 - -
Lan20g1072 930 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 869 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lan20g1072 930 SUPERFAMILY "Winged helix" DNA-binding domain 718 790 IPR036390 -
Lan20g1072 930 Coils Coil 143 170 - -
Lan20g1072 930 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 929 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lan20g1072 930 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 929 - -
Lan20g1072 930 MobiDBLite consensus disorder prediction 134 153 - -
Lan20g1072 930 MobiDBLite consensus disorder prediction 154 173 - -
Lan20g1072 930 MobiDBLite consensus disorder prediction 850 884 - -
Lan20g1072 930 MobiDBLite consensus disorder prediction 44 69 - -
Lan20g1072 930 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 45 651 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lan20g1072 930 SMART PINT_4 720 808 IPR000717 -
Lan20g1072 930 MobiDBLite consensus disorder prediction 193 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1072 Lan-Chr20 12417830 12423050 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1072 1 930 Eukaryotic Initiation Factors Gene Family AT3G56150 68.803 0.0 1206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1072 K03252 - gmx:100781967 1420.6