Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1057 ATGAAAATAGCATTGTCTGTGTTACTTTGCAGTGAAAATGCAAAAAAGGAAGAAATTCAGTTGTTCTTATGGGTCAAGTTGCCGAATGCGAAGAAAATGGGGAGGAATGGAAATTGGTTTTCTTCTGTGAAGAAAGTTCTCAGCCCTGAGCCAAAGGGAAGGAAAGATCAGAAGTCAATAAAATCGAAGAAGAAATGGTTTGGGAAGCAAAAGTTGCAGACTTCAGAGGCATACTCGGAAGCTGATAAAGCAACTCCTCTTCCTGTACCTGAGGAGACCATTTTAACTCATATCGATAACGAAAACAGTAATGATCATGTTGTTGAAGTTGCAACTCTCTTGGAGGCAGAGGAACCTGTTCTTGCTGTTCAGACAGCAGCTGCTGAGGTTCAAGCTACTGCAGTTGTTCAGTTTGCTGGTAAACCAAAGGATGAAGTGGCAGCAATGAAGATTCAAAAAGCTTTTCGGGGATACTTGGCAAGAAGAGCATTGCGTGCTCTAAAGGGGCTGGTCAGGTTGAAGTCACTGATGGAAGGGCAAGTTGTAAAACGCCAAGCAATTAGTACCCTTCGCTCTATGCAGACTTTTGCTCATTTACAATCTCAGATTCATTCTAGGAGGCTGAGGATGTTAGAGGAGACTCAAGCTCTGCAGAAACTGCTCTTGCAGAAGCACGCAAAAGAACTAGACAGCGTACGGCTTGGAGAGGAATGGGATGATAGCCTACAATCCAAGGAACAAATTGAAGCCAAGTTACTAAGCAAGTATGAGGCTGCAACAAGAAGAGAAAGAGCACTGGCTTACTCATACTCTCATCAGAAAAATGGGAAGAGTTCATCTAGATCTATAAATCCAATGTTCATCGATCCAACTAATCCTTCCTGGGGTTGGAGCTGGTTGGAACGATGGACGACAGCCCGGCCTTGGGAGAGCAATAGTCTGATGGAGAAAGAAAAAAACGACAATTCTTATGTAAAAAATCCAACCCGAGGCTTAACGAATGCTGAAATCAGCAAATCATTTGCTCGTTTCCAGCTCAATTCCGAAAAGCATTCTCCAACAGCCAGCCAAATTCCAGCCTCTCCTAGATTTCAGTCTAATTCTAATCCTCCCAAGCCAGCTTCTACAGCTGTTGCTAAGAAAATTAAGAAGGTGGTCCCGAAGGAAAATTCGGTCATCGATGATGACACCAAAAGCATGGTCAGTGTGCAATCAGAGCAGTTCCGGAGGCACTCCATTGCAGGGTCAACGATCAGAGATGATGAAAGCCTTGCAAGCTCTCCTGCACTTCCAAGTTATATGGTGCCAACTAGATCGGCAAAAGCTAAGTCCAAGATGCAAAGTACATTGGCTGCAGATAATGGCACCATTGAGAAGTTGGCTGCAAAGAAAAGGCTCAGTTTCCCAGCATCACCTGCCAGGCCAAGGCGGCATTCGGGTCCACCGAAGGTCGAAAGCGGCTTAATTGCAGAAATTACTGTGGGCAATGGTGTGGCTGGTTGA 1503 0.4478 MKIALSVLLCSENAKKEEIQLFLWVKLPNAKKMGRNGNWFSSVKKVLSPEPKGRKDQKSIKSKKKWFGKQKLQTSEAYSEADKATPLPVPEETILTHIDNENSNDHVVEVATLLEAEEPVLAVQTAAAEVQATAVVQFAGKPKDEVAAMKIQKAFRGYLARRALRALKGLVRLKSLMEGQVVKRQAISTLRSMQTFAHLQSQIHSRRLRMLEETQALQKLLLQKHAKELDSVRLGEEWDDSLQSKEQIEAKLLSKYEAATRRERALAYSYSHQKNGKSSSRSINPMFIDPTNPSWGWSWLERWTTARPWESNSLMEKEKNDNSYVKNPTRGLTNAEISKSFARFQLNSEKHSPTASQIPASPRFQSNSNPPKPASTAVAKKIKKVVPKENSVIDDDTKSMVSVQSEQFRRHSIAGSTIRDDESLASSPALPSYMVPTRSAKAKSKMQSTLAADNGTIEKLAAKKRLSFPASPARPRRHSGPPKVESGLIAEITVGNGVAG* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1057 500 ProSiteProfiles IQ motif profile. 144 172 IPR000048 GO:0005515
Lan20g1057 500 PANTHER IQ-DOMAIN 5-RELATED 33 492 - -
Lan20g1057 500 MobiDBLite consensus disorder prediction 463 486 - -
Lan20g1057 500 Pfam Protein of unknown function (DUF4005) 424 473 IPR025064 -
Lan20g1057 500 Pfam IQ calmodulin-binding motif 147 165 IPR000048 GO:0005515
Lan20g1057 500 Gene3D iswi atpase 142 179 - -
Lan20g1057 500 MobiDBLite consensus disorder prediction 348 375 - -
Lan20g1057 500 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 33 492 - -
Lan20g1057 500 SMART iq_5 143 165 IPR000048 GO:0005515
Lan20g1057 500 MobiDBLite consensus disorder prediction 348 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1057 Lan-Chr20 11693385 11697048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1057 33 499 IQD Protein Family AT5G03040 48.140 4.19e-135 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1057 - - gmx:100801847 628.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0340 5 6008884 6014006 Lan20g1057 20 11693385 11697048 PCT
Lan19g0442 19 6137682 6141681 Lan20g1057 20 11693385 11697048 PCT
Lan20g1057 20 11693385 11697048 Lan5g0340 5 6008884 6014006 PCT
Lan20g1057 20 11693385 11697048 Lan19g0442 19 6137682 6141681 PCT