Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1051 ATGTCTGAATCCCCTGTGAGTCCAGGCGGCGGCGACGGCGGAGGAAGCCACGATAGTGGGGACCACAGCCCCCGCTCCAATCACAGGGAGCAGGAAGGGTTTCTCCCTATTGCTAACATCAGTCGAATCATGAAGAAGGTTCTTCCCCCTAACGGAAAAATTGCAAAGGATGCAAAGGATATTGTTCAGGAATGTGTCTCTGAGTTCGTCAGCTTCATTACCAGCGAGGCGAGTGATAAGTGCATGAGAGAGAAGAGGAAGACGATTAATGGCGATGATTTGCTATGGGCAATGGCTATAGTGGGCTTTGAGGAATATATTGAACCGCTCAAGATTTACCTCACCAGATACAGGGAGATTGAGGGTGATACCAAGGGTTTAACTAAGGGAGGACATCCACCTTCCAGGAAAGATGTTCATCCAAGCCCAAATGCTCAGTTTTCTCATCAAAGTTCTTTCTCGCAAGGTTTTGATTACTCAAATTCTCAGGCTCAACATATGACGCTTCCTTATCAAGGCTCTGAATAG 528 0.4735 MSESPVSPGGGDGGGSHDSGDHSPRSNHREQEGFLPIANISRIMKKVLPPNGKIAKDAKDIVQECVSEFVSFITSEASDKCMREKRKTINGDDLLWAMAIVGFEEYIEPLKIYLTRYREIEGDTKGLTKGGHPPSRKDVHPSPNAQFSHQSSFSQGFDYSNSQAQHMTLPYQGSE* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1051 175 SUPERFAMILY Histone-fold 31 147 IPR009072 GO:0046982
Lan20g1051 175 PRINTS CCAAT-binding transcription factor subunit A signature 62 80 - -
Lan20g1051 175 PRINTS CCAAT-binding transcription factor subunit A signature 81 99 - -
Lan20g1051 175 PRINTS CCAAT-binding transcription factor subunit A signature 100 118 - -
Lan20g1051 175 MobiDBLite consensus disorder prediction 141 158 - -
Lan20g1051 175 Gene3D Histone, subunit A 20 156 IPR009072 GO:0046982
Lan20g1051 175 MobiDBLite consensus disorder prediction 124 158 - -
Lan20g1051 175 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 167 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lan20g1051 175 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 34 98 IPR003958 -
Lan20g1051 175 MobiDBLite consensus disorder prediction 1 34 - -
Lan20g1051 175 PANTHER BNAA04G21250D PROTEIN 15 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1051 Lan-Chr20 11587799 11591433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1051 1 175 CCAAT-HAP3 Transcription Factor Family AT2G37060 67.598 1.72e-77 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lan20g1051 CBFD_NFYB_HMF 4.9e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1051 K08065 - gmx:100798667 254.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0335 5 5886114 5889094 Lan20g1051 20 11587799 11591433 PCT
Lan20g1051 20 11587799 11591433 Lan5g0335 5 5886114 5889094 PCT