Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1050 ATGGCTGCAGCGGCGCGTCCCCTCGTCACCGTCCAATCCCTCGACGGCGATATAGCCACTGACTCCGCCCCCACCGTCCCCCTCCCTGACGTCATGAAATCCTCCATCCGCCCTGACATCGTCAACTACGTCCACTCCAACATCTCCAAAAACTCTCGCCAACCCTACGCCGTCTCCCGCCGCGCCGGACACCAGACCTCCGCCGAGTCATGGGGAACCGGTCGTGCTGTATCCCGTATCCCCCGTGTCTCCGGTGGTGGAACCCACCGCGCCGGCCAGGCTGCCTTCGGAAACATGTGTCGCGGTGGACGCATGTTTGCGCCGACCAGGATCTGGCGCCGCTGGCACCGGAAGATCAATATCAATCAGAAACGATACGCTGTCGTTTCGGCTATTGCTGCTTCTGCTATTCCTTCACTTGTTCTCGCTCGAGGCCACCGCATCGAAACTGTCCCTGAGCTTCCACTCGTTGTCAGCGACACCGCAGAAGGAGTTGAAAAAACGAAGGAGGCGATCAAAGTCCTTAAGCAGATCGGAGCATTTTCCGATGCGGAGAAGGCGAAAGACAGCCGTGGAATCCGTCCTGGAAAGGGAAAGATGAGGAATCGTCGCTACATTGCGCGAAAAGGTCCTCTGATTGTTTATGGAACCGAAGGTGCGAAAGCAGTTAAGGCTTTTCGCAATGTGCCTGGTGTTGAGATTGCTAATGTTGAGAGGTTGAATTTGTTGAAGCTCGCGCCAGGTGGACACCTTGGAAGGTTTGTTGTTTGGACTAAATCGGCTTTTGAGAAGCTCGATTCGATTTATGGCTCATTTGATAAGGCTGCTGAGAAGAAGAAGGGGTATGTGTTGCCGAGGTCGAAGATGGTGAATGCTGATTTGGCTAGGATTATTAACTCTGATGAGGTGCAATCTGTTGTGAAACCGATTAAGAAGGAGGTGAAGAGGACCTCAATCAAGAAGAATCCATTGAAGAATCTGAATGTTTTGTTGAAGCTGAATCCTTATGCTAAGACTGCTAAAAGGATGGCTTTGCTTGCTGAGGAGCAGAGAGTTAAGGCTAAGAAGGAGAAGCTTGATAAGAAGAGGAAGAACAATGTCCCCAAGGAGGAAGCTTCTGCAATCAGAGCTGCAGGGAAAGCATGGTATCAAACTATGGTGTCTGACTCCGATTACGCAGAATTTGACAACTTTTCGAAGTGGTTGGGTGTTTCACAGTGA 1221 0.516 MAAAARPLVTVQSLDGDIATDSAPTVPLPDVMKSSIRPDIVNYVHSNISKNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVSGGGTHRAGQAAFGNMCRGGRMFAPTRIWRRWHRKININQKRYAVVSAIAASAIPSLVLARGHRIETVPELPLVVSDTAEGVEKTKEAIKVLKQIGAFSDAEKAKDSRGIRPGKGKMRNRRYIARKGPLIVYGTEGAKAVKAFRNVPGVEIANVERLNLLKLAPGGHLGRFVVWTKSAFEKLDSIYGSFDKAAEKKKGYVLPRSKMVNADLARIINSDEVQSVVKPIKKEVKRTSIKKNPLKNLNVLLKLNPYAKTAKRMALLAEEQRVKAKKEKLDKKRKNNVPKEEASAIRAAGKAWYQTMVSDSDYAEFDNFSKWLGVSQ* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1050 406 PANTHER 60S RIBOSOMAL PROTEIN L4 2 406 IPR045240 -
Lan20g1050 406 Pfam Ribosomal protein L4/L1 family 26 266 IPR002136 GO:0003735|GO:0005840|GO:0006412
Lan20g1050 406 ProSitePatterns Ribosomal protein L1e signature. 120 146 IPR013000 -
Lan20g1050 406 Coils Coil 345 365 - -
Lan20g1050 406 Gene3D - 3 308 IPR023574 GO:0003735|GO:0005840|GO:0006412
Lan20g1050 406 SUPERFAMILY Ribosomal protein L4 9 267 IPR023574 GO:0003735|GO:0005840|GO:0006412
Lan20g1050 406 Pfam 60S ribosomal protein L4 C-terminal domain 280 352 IPR025755 -
Lan20g1050 406 MobiDBLite consensus disorder prediction 54 74 - -
Lan20g1050 406 MobiDBLite consensus disorder prediction 54 73 - -
Lan20g1050 406 PANTHER BNAC03G35890D PROTEIN 2 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1050 Lan-Chr20 11556339 11558422 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1050 2 406 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 80.247 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1050 K02930 - gmx:100779764 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1405 11 22291364 22293648 Lan20g1050 20 11556339 11558422 LSH
Lan9g0437 9 6679403 6681572 Lan20g1050 20 11556339 11558422 PCT
Lan5g1190 5 25903171 25905171 Lan20g1050 20 11556339 11558422 PCT
Lan20g1050 20 11556339 11558422 Lan9g0437 9 6679403 6681572 PCT
Lan20g1050 20 11556339 11558422 Lan5g1190 5 25903171 25905171 PCT