Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1047 ATGCCACCGAAGCAGCAATCAAAAGCAGATTTAGCGAAGAAACAGAAATTGGTAGAAGACAAAACCTTCGGTCTCAAGAACAAGAACAAAAGCAAGAATGTTCAAAAGTATGTTCAGAATCTCAAACAATCCATTCCGCAGCCTGATGCTGCAAAAATCGCTGCTAAGAAAAAGAAGGAGGAAGAGAAAGCCAAGGAAAAGGAGCTAAATGATTTGTTCAAAATTGCTGTTAGTCAGCCTAAAGTCCCAGTTGGTGTTGATCCCAAGTCCATAGTATGTGAGTTTTTTAAAGTGGGGCAGTGTACCAAAGGATTCAAATGCAAATTCTCACATGATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACATTTACAGCGATAAGCGCGACGATGAAACAATGGAGGAATGGGATCAAGAGACATTGGAGAAGGTGGTAGAGTCAAAGAAAAATGAGTATAATCAGAACAAACCTACTGACATAGTCTGTAAACACTTTTTGGACGCAGTAGAGAAGAAGCAATATGGTTGGTTTTGGGTCTGCCCTAATGGTGGTAAGAACTGCCACTATAGACATGCACTTCCACCTGGATATATTTTAAAATCTCAAATGAAGGCTCTGTTAGAGGAAGAAAGTGATAAGATAACAATTGAAGAGGAGATTGAAAATCAGCGTGCCAAAGTGGCAACTACAACTCCTATGACTCCCGATTTATTCCATCAATGGAAGAAGAAGAAGATAGAAGAAAGGGATGCCAATTTGGCTGCACAACAGGCAGATAGGGCTAAGAATGACCGCATGAGTGGCCGTGAGCTATTTTTGTCAGACGCTACCTTGTTTGTGGATGATGATGAAGCATATGAGAAGTACCAAAGAGAACCAGAACCAGAATCTGATAACACTGACCAGAAAGCAAATGGGAATTCTGTTGAACATGGTCCCAGTACCTCAGCAGCAGCTGGTTCTGATGCTGATGACGACGACGATGATGAATTGGACATGGATGAGTTGAATGAATTAGAAGCAAGCTTATCAAAGACTTCAATCCAAATAAAAGAGTCAGGAGCTGAAGCTTAA 1077 0.4085 MPPKQQSKADLAKKQKLVEDKTFGLKNKNKSKNVQKYVQNLKQSIPQPDAAKIAAKKKKEEEKAKEKELNDLFKIAVSQPKVPVGVDPKSIVCEFFKVGQCTKGFKCKFSHDLNVQRKGEKIDIYSDKRDDETMEEWDQETLEKVVESKKNEYNQNKPTDIVCKHFLDAVEKKQYGWFWVCPNGGKNCHYRHALPPGYILKSQMKALLEEESDKITIEEEIENQRAKVATTTPMTPDLFHQWKKKKIEERDANLAAQQADRAKNDRMSGRELFLSDATLFVDDDEAYEKYQREPEPESDNTDQKANGNSVEHGPSTSAAAGSDADDDDDDELDMDELNELEASLSKTSIQIKESGAEA* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1047 358 ProSiteProfiles Zinc finger C3H1-type profile. 87 114 IPR000571 GO:0046872
Lan20g1047 358 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 357 - -
Lan20g1047 358 SUPERFAMILY CCCH zinc finger 88 112 IPR036855 GO:0046872
Lan20g1047 358 Coils Coil 207 227 - -
Lan20g1047 358 Gene3D - 204 278 - -
Lan20g1047 358 ProSiteProfiles Zinc finger C3H1-type profile. 157 195 IPR000571 GO:0046872
Lan20g1047 358 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 21 1 357 - -
Lan20g1047 358 MobiDBLite consensus disorder prediction 322 338 - -
Lan20g1047 358 Pfam DRG Family Regulatory Proteins, Tma46 214 297 IPR032378 -
Lan20g1047 358 Coils Coil 50 72 - -
Lan20g1047 358 SMART c3hfinal6 87 113 IPR000571 GO:0046872
Lan20g1047 358 SMART c3hfinal6 157 194 IPR000571 GO:0046872
Lan20g1047 358 MobiDBLite consensus disorder prediction 301 316 - -
Lan20g1047 358 Gene3D - 86 203 - -
Lan20g1047 358 Coils Coil 245 265 - -
Lan20g1047 358 MobiDBLite consensus disorder prediction 288 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1047 Lan-Chr20 11531616 11535927 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan20g1047 DFRP_C 1.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1047 - - gmx:100806617 611.298