Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan20g1045 | ATGACAAGGGGTGCCCTGTTGAGTGTTGATGGCGACGATAAAGATATGAAAGAAGTGACTCAGTGCCTACAGGATGAGAAGACCTTTAATGATGGAGTTGATGGCGAGGGAAACAGTTTACTAGGGGATGACGGAGTTAAATGTAATGGAGTAGCTGAAGAAGTCAAGGTTGTTGGACAGGGAGGGACTCTGGAGTCCTCTTCTGTCCAGCAGCATATACCACAGCCACAGCCTCAGGGGGCAATAGTTTGTTGGGAAAGGTTTTTACATATTAGATCTCTTAAGGTCTTGCTTGTGGAGTATGATGACTCTACTCGCCATGTTGTCACTGCACTCCTTCGCAATTGTAGTTATGAAGTTATTGAAGCAGAAAACGGATTGCAAGCTTGGAAGATGTTGGAGGATTTAACCAATCATGTTGATCTCATTTTAACTGAGGTTGCAATGCCTGGCTTATCTGGCATTGGTCTCCTATACAAGATTATGAGCCACAAAACACGGAAAAACGTTCCAGTAATTATGATGTCTTCTCATGACTCTATGGGTTTAGTCTTTAAGTGTTTGTCAAAGGGGGCTGTTGACTTTCTTGTTAAACCCATACGGAAGAATGAGCTTAAAAACCTGTGGCAGCATGTTTGGAGGAGATGCCATAGTTCTAGTGGTAGTGGGAGTGAAAGTGGCACACAAACCCAAAAGTCTGTAAAATCAAAGAGCCTCGAGAAGTCTGATAATAATTCTGGAAGCAATGACAAAGATGATGATGGAAGTGAAGGCCTGAATAATGGGGATGGAAGTGACAATGGTAGTGGCACTCAGAGCTCCTGGACTAAACAAGCTGTGGAAGTTGATAGTCCTGAACCTACTTTCCAGTGGGATCAAATAGCCGAATGTCCTGATAGCACTTGTGCCCAAGTTGTTCACTCCAATGCTGAAATATGCGGTAACAAAGTAGTTCCTCTAGCCATAAAGGAATCTACAGAACAAAAAGAACAACTTGGTTCAAAACATAGCCAAGCTCAAGATGTAGGTCCCTCTAAATTCAATGAGAAAATTAGCAGAGGGCTGGACCTTAATTGTGAGAACCAATCTAGCGAGCCAAGGTGCAAAGGTATCTCAGTGTCTGATGCCATTCCTAGAACTTTTGATTCTCACATGCATAGTGGAGAATTTGAGTCCCTAGACAAAAGACTGAAGTACTCAGATGTTGAAAATAAAGGTACTAATAATGATGAAGAATTGCCATCTCTTGAGCTTAGTTTGAAGAGGCTTAGAGGAGTTAAACATGCTGGTATTACAGTTCAGGATGAACGAAATGTTTTAAGACGTTCTGACCTTTCTGCCTTCTCAAGGTATAATGCAGCCTCTAACACTAAGAAGTCTCCCACTGGATATGTTGGAAGCAATTCTCCACACGACAATAGCTTAGAAGTCACAAAGAAAGATTTGTCTCATGACATTCAGTCTCATTCTAGTGGCAATCCTCCTAACCAGAACTCAAATGGTGCTAGCAATAACATTGATATGGGTTCCACCACTGATAATAATGCTTTTACTAAATCTGCTGTCATAAGGGGGCCAGCAGTGGCATCAACAACCAAGTGTCTGTATCAATCATCAGCTTTCCAGCCTCTAAATAACAATCTAATTTGTGCTTCTAAACAAGTAGTATTACATGATACTGAAGATAAGATCACATCAAATCTGGCACCGCCTAAAGTAGATATCCATAAGGATTCTGCATCTAAGGACTTTTATCACCATTATGAAAGCCATAACTGTCTTGCTAACAACATGCAGCACCAGGTGCCACTCGATCATCGTGCTGAATTATTTAAGAAAATGGCTGCTGCTGCTCCACATTTTGGGTCATCAAATGTGGTCGAAGTGGTAGTTGAAGGTAATGTTGGAAATTACAGTGTCAATAGAAGTGCTTCAGGCAGCAACAACGGAAGCAATGGACAAAATGGGTGCAGCACAGCTTTTAATGTTGGAGGGACAAACATAGAAAATAACAATGGACCTGCTGGGAATAGTGGCAGCGGTGATGGTAGTGCGAACAGAGTAGATCAGAACAAGATTTCTCAAAGGGAAGCAGCCTTAACTAAATTTCGCGAGAAGAGAAAGGAAAGATGCTTTCATAAAAAGGTTCGATATCAGAGCAGAAAGAAATTAGCTGAACAACGCCCACGATTTCGTGGACAATTTGTGCGACAGTCCTCAAATGGAAGTGCAAGTGAGGCAACAGATAGCTGA | 2253 | 0.419 | MTRGALLSVDGDDKDMKEVTQCLQDEKTFNDGVDGEGNSLLGDDGVKCNGVAEEVKVVGQGGTLESSSVQQHIPQPQPQGAIVCWERFLHIRSLKVLLVEYDDSTRHVVTALLRNCSYEVIEAENGLQAWKMLEDLTNHVDLILTEVAMPGLSGIGLLYKIMSHKTRKNVPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSLEKSDNNSGSNDKDDDGSEGLNNGDGSDNGSGTQSSWTKQAVEVDSPEPTFQWDQIAECPDSTCAQVVHSNAEICGNKVVPLAIKESTEQKEQLGSKHSQAQDVGPSKFNEKISRGLDLNCENQSSEPRCKGISVSDAIPRTFDSHMHSGEFESLDKRLKYSDVENKGTNNDEELPSLELSLKRLRGVKHAGITVQDERNVLRRSDLSAFSRYNAASNTKKSPTGYVGSNSPHDNSLEVTKKDLSHDIQSHSSGNPPNQNSNGASNNIDMGSTTDNNAFTKSAVIRGPAVASTTKCLYQSSAFQPLNNNLICASKQVVLHDTEDKITSNLAPPKVDIHKDSASKDFYHHYESHNCLANNMQHQVPLDHRAELFKKMAAAAPHFGSSNVVEVVVEGNVGNYSVNRSASGSNNGSNGQNGCSTAFNVGGTNIENNNGPAGNSGSGDGSANRVDQNKISQREAALTKFREKRKERCFHKKVRYQSRKKLAEQRPRFRGQFVRQSSNGSASEATDS* | 751 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan20g1045 | 750 | MobiDBLite | consensus disorder prediction | 218 | 284 | - | - | |
| Lan20g1045 | 750 | MobiDBLite | consensus disorder prediction | 456 | 473 | - | - | |
| Lan20g1045 | 750 | MobiDBLite | consensus disorder prediction | 260 | 283 | - | - | |
| Lan20g1045 | 750 | MobiDBLite | consensus disorder prediction | 668 | 692 | - | - | |
| Lan20g1045 | 750 | Gene3D | - | 93 | 248 | - | - | |
| Lan20g1045 | 750 | MobiDBLite | consensus disorder prediction | 719 | 750 | - | - | |
| Lan20g1045 | 750 | CDD | psREC_PRR | 96 | 199 | - | - | |
| Lan20g1045 | 750 | SUPERFAMILY | CheY-like | 92 | 218 | IPR011006 | - | |
| Lan20g1045 | 750 | MobiDBLite | consensus disorder prediction | 733 | 750 | - | - | |
| Lan20g1045 | 750 | ProSiteProfiles | CCT domain profile. | 696 | 738 | IPR010402 | GO:0005515 | |
| Lan20g1045 | 750 | MobiDBLite | consensus disorder prediction | 236 | 258 | - | - | |
| Lan20g1045 | 750 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR-LIKE PRR37 | 39 | 727 | - | - | |
| Lan20g1045 | 750 | MobiDBLite | consensus disorder prediction | 487 | 512 | - | - | |
| Lan20g1045 | 750 | SMART | REC_2 | 94 | 209 | IPR001789 | GO:0000160 | |
| Lan20g1045 | 750 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 39 | 727 | IPR045279 | GO:0009736 | |
| Lan20g1045 | 750 | MobiDBLite | consensus disorder prediction | 456 | 475 | - | - | |
| Lan20g1045 | 750 | MobiDBLite | consensus disorder prediction | 482 | 512 | - | - | |
| Lan20g1045 | 750 | ProSiteProfiles | Response regulatory domain profile. | 95 | 213 | IPR001789 | GO:0000160 | |
| Lan20g1045 | 750 | Pfam | Response regulator receiver domain | 96 | 207 | IPR001789 | GO:0000160 | |
| Lan20g1045 | 750 | Pfam | CCT motif | 696 | 738 | IPR010402 | GO:0005515 | |
| Lan20g1045 | 750 | MobiDBLite | consensus disorder prediction | 218 | 235 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan20g1045 | Lan-Chr20 | 11463293 | 11473851 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan20g1045 | 170 | 740 | Response Regulator Gene Family | AT5G02810 | 45.994 | 9.61e-114 | 354 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | Pseudo ARR-B | Lan20g1045 | Response_reg | 1.6e-21 | CL0304 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan20g1045 | K12129 | - | gmx:100796933 | 1092.03 |