Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1044 ATGGGTTGGAATCTATGTTCTGGAAATTCAAACCCTAAGAAGAAGATCGTGGAAGTGCGGGACAACATTGTTGATCCAATTAGAACCACCCCAGAGAAACTGAAGAGGAATCACTCCATGAATTCCAAAGATTCCTCTAAAAGTCGGAGCACTGATCATATTGCTGCACAGACATTCTTGTTCCGCGAATTGGCAGATGCAGCTAGAAATTTTAAAGCAGAATGTCTTATAGGCAAGGGTGGATTCGGTAGAGTTTACAAAGGACATTTGGAAAGTATTAATCAGGTTGTCGCAATTAAGCGACTTGATCTAAATGGGCTGCAAGGGAACAGAGAATTCCTTGTTGAAGTATTGATGTTAAGTCTTCTTCACCACCCCAACCTTGTCAACATGATTGGTTATTGTGCTGATGGAGATCAAAGACTTTTAGTTTATGAATATATGTCATTAGGATCTTTAGAAGACCACTTACATGATATTGCTCCTGGAAAGAAGCAGCTTGACTGGAACGCAAGAATGAAAATAGCGGCTGGGGCAGCACAGGGATTGGAATATCTACATGACAAAGCTAACCCTCCTGTCATATACCGAGATATAAAGTGCTCCAACATTTTGCTCGGCGATGGGTATCACCCAAAGTTATCTGATTTTGGTTTGGCTAAACTTGGCCCGATCGGGGAAAAGACCCATGTATCAACAAGGGTTATGGGCACCCATGGATATTGTGCTCCTGAGTATGCAATGACAGGTCAACTGACTCTAAAATCAGATGTTTATAGCTTTGGTGTAGTTCTTCTGGAAATAATTACCGGAAGAAAGGCGTTTGACAATTCTAAGTCTGCAGAAGAGCAGAATCTTGTTGCATGGGCTAGACCCTTGTTGAAAGAACGTAGAAATTTTTCACAAATGGCTGATCCAGTGCTCCAAGGTCAATATCCGGCAAGAGGACTATACCAGGCACTTGCTGTTGCTGCAATGTGTGTTCAGGAGCAGGCCAACATGCGTCCACTTATTGCTGATGTTTCCAAAGCTTTTAGTTACCTTGCTGCACAAAGATATGACACCGATACACAGACGGTACAAAGCTCTCGCCTCGCTCCCAGTACACCTCCTAGAACCAAGAAGGGATAA 1131 0.4288 MGWNLCSGNSNPKKKIVEVRDNIVDPIRTTPEKLKRNHSMNSKDSSKSRSTDHIAAQTFLFRELADAARNFKAECLIGKGGFGRVYKGHLESINQVVAIKRLDLNGLQGNREFLVEVLMLSLLHHPNLVNMIGYCADGDQRLLVYEYMSLGSLEDHLHDIAPGKKQLDWNARMKIAAGAAQGLEYLHDKANPPVIYRDIKCSNILLGDGYHPKLSDFGLAKLGPIGEKTHVSTRVMGTHGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAFDNSKSAEEQNLVAWARPLLKERRNFSQMADPVLQGQYPARGLYQALAVAAMCVQEQANMRPLIADVSKAFSYLAAQRYDTDTQTVQSSRLAPSTPPRTKKG* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1044 376 MobiDBLite consensus disorder prediction 27 50 - -
Lan20g1044 376 SUPERFAMILY Protein kinase-like (PK-like) 57 345 IPR011009 -
Lan20g1044 376 ProSiteProfiles Protein kinase domain profile. 71 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g1044 376 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Lan20g1044 376 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL7-RELATED 1 375 - -
Lan20g1044 376 CDD STKc_IRAK 77 341 - -
Lan20g1044 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Lan20g1044 376 PANTHER OS07G0668900 PROTEIN 1 375 - -
Lan20g1044 376 Gene3D Transferase(Phosphotransferase) domain 1 148 367 - -
Lan20g1044 376 SMART serkin_6 71 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan20g1044 376 Gene3D Phosphorylase Kinase; domain 1 31 147 - -
Lan20g1044 376 Pfam Protein kinase domain 75 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1044 Lan-Chr20 11458656 11461240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1044 7 350 Glycoside Hydrolase AT3G07070 62.791 1.97e-159 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lan20g1044 Pkinase 3.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1044 - - lang:109335004 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0330 5 5629088 5632601 Lan20g1044 20 11458656 11461240 PCT
Lan20g1044 20 11458656 11461240 Lan5g0330 5 5629088 5632601 PCT