Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1042 ATGACTAGGAAGAAGGTGAAAGTTGCTTATATTAATGATGTCAATGCAAGGAAAGCAACATTCAGGAAAAGGAAGAAGGGTATCATGAAGAAGGTGAATGAACTCACTGTTCTTTGTGGAATTCAAGGTTGTGCTATAATTCAGAATCCTTTTGATTCCCAAATAGAGGTTTGGCCTAACCCAAAAGGAGCTAAGAAGGTTGTTGAAAGGTATATGAGTACTTCTAAAGTCGATGAAACCAAGAATATGAACCAAGAGAGCTTTTTCGTGCAGAGGATCTCCAAATTACAAGGCAAGCTTAATAAATTACGTAGCGAAAATCGTGAGAAGGAGATGGCCTTAGCTATGCTGGAGTATTTTCAAACCAAAAAACTTCCAGAAAATCTCACCCTCACAGATTTGAAGGAGATGGAGAAGTTGATTGAGCAATGTGTGAAGGAAACTGAAAATAAGATGGTTACCCTTTGTTGA 471 0.38 MTRKKVKVAYINDVNARKATFRKRKKGIMKKVNELTVLCGIQGCAIIQNPFDSQIEVWPNPKGAKKVVERYMSTSKVDETKNMNQESFFVQRISKLQGKLNKLRSENREKEMALAMLEYFQTKKLPENLTLTDLKEMEKLIEQCVKETENKMVTLC* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1042 156 Coils Coil 93 113 - -
Lan20g1042 156 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Lan20g1042 156 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 154 - -
Lan20g1042 156 SUPERFAMILY SRF-like 1 83 IPR036879 GO:0003677|GO:0046983
Lan20g1042 156 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Lan20g1042 156 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan20g1042 156 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan20g1042 156 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Lan20g1042 156 PANTHER MADS BOX PROTEIN 2 154 - -
Lan20g1042 156 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan20g1042 156 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1042 Lan-Chr20 11415710 11416316 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1042 1 147 Type I MADS-box Gene Family AT3G05860 43.243 6.84e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan20g1042 SRF-TF 1.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1042 - - gmx:100792290 192.586