Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1041 TTGCAAACCTGCAGGGTGAATGATCCAGTGGCATTAAAGCTACTTGGCAAGGCAGGAGAGATGCCCTCTCTGGAGGCTCCTGAAGATGAGAGCATTAAAACTCTTTATGTTGGTGGACTTGATGCAAGGGTCACTGAGCAGGATTTGCGGGATAACTTCTATGCCCATGGTGAAATTGAATCCATCAAAATGGTTCTTCAACGGGCTTGTGCTTTTGTGACCTATACAACCAGAGAAGCCGCCGAAAAGGCAGCAGAAGAACTCTCAAACAAACTGGTTATTAAGGGCCTAAGGCTAAAGCTGATGTGGGGTAGGCCTCAGTCGGCGAAACCTGAGTCGGATGACTCCAACCAAGCAAGGCAGCAGGCTTCTGTGGCTCATAGCGGGTTGTTGCCTAGAGCGATTATATCACAGCAGCAAAGCCAGGACCAGAACCAAGGAATGGTTTACTATAGCAATCCACCTCCTCAACCGCAAAGAAGCTATTACCCATCAATGGATCCTCAAAGAATGGGTGCTCTTATTCCTTCTCAAGAGGGTCCTCCTGGGGGACCTTCCGGGTCTGGGGAGAACAAACCCATTATGGAGAAGCAGCAAATGCAACATTATGCCCATCCAATGAGGCCTCCACCACCAGGCCAATATCAACATCAGTATTATCCTCCATATGGCTATATGCCCCCAGTTCCCCATTATCAACAACAGTACCCACCACCACCATATAATGCTCCGATGCCTCCATCCCACCCACCAGCTGTAAATCATCCTTATCAGCATTCCATGCAGCCAGGGTCTTCACAGGCAGGGTCTGCTCAGGGTGGCTCTGCACCTGCCGAAGCCGGAACATCGTCATCAGGGTCACAGCAGCAGTGA 873 0.5017 LQTCRVNDPVALKLLGKAGEMPSLEAPEDESIKTLYVGGLDARVTEQDLRDNFYAHGEIESIKMVLQRACAFVTYTTREAAEKAAEELSNKLVIKGLRLKLMWGRPQSAKPESDDSNQARQQASVAHSGLLPRAIISQQQSQDQNQGMVYYSNPPPQPQRSYYPSMDPQRMGALIPSQEGPPGGPSGSGENKPIMEKQQMQHYAHPMRPPPPGQYQHQYYPPYGYMPPVPHYQQQYPPPPYNAPMPPSHPPAVNHPYQHSMQPGSSQAGSAQGGSAPAEAGTSSSGSQQQ* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1041 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 93 IPR000504 GO:0003723
Lan20g1041 290 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49-LIKE 5 269 - -
Lan20g1041 290 MobiDBLite consensus disorder prediction 205 253 - -
Lan20g1041 290 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 5 269 IPR039171 GO:0003723
Lan20g1041 290 MobiDBLite consensus disorder prediction 110 125 - -
Lan20g1041 290 MobiDBLite consensus disorder prediction 139 290 - -
Lan20g1041 290 MobiDBLite consensus disorder prediction 106 126 - -
Lan20g1041 290 Gene3D - 18 116 IPR012677 -
Lan20g1041 290 SMART rrm1_1 34 102 IPR000504 GO:0003723
Lan20g1041 290 MobiDBLite consensus disorder prediction 139 156 - -
Lan20g1041 290 MobiDBLite consensus disorder prediction 258 290 - -
Lan20g1041 290 CDD RRM_RBM22 32 105 - -
Lan20g1041 290 SUPERFAMILY RNA-binding domain, RBD 26 114 IPR035979 GO:0003676
Lan20g1041 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 106 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1041 Lan-Chr20 11371999 11373195 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1041 25 94 Eukaryotic Initiation Factors Gene Family AT1G49760 33.333 9.89e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1041 K12872 - lang:109335490 445.662