LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan20g1040	ATGGCGCATAGGTTGCTGAGAGATCACGAAGCCGATGGATGGGAGCGCTCCGATTTCCCCATCATCTGTGAATCTTGCCTCGGCGACAGTCCCTACGTTCGAATGACAAAAGCAGAGTATGACAAAGAATGCAAGATTTGTACCCGGCCTTTTACTGTTTTTAGATGGAGACCTGGCCGAGATGCAAGATATAAGAAAAGTGAGATTTGCCAGACGTGTAGCAAATTGAAAAATGTTTGTCAGGTGTGCCTTCTGGATCTTGAATATGGATTGCCTGTTCAAGTCCGTGATACAGCTCTGAGTATTGATTCTAATGATTCCATTCCCAAGAGTGATGTTAATAGGGAGTATTTTGCAGAAGAGCATGACCGCAAGACTAGAGCTGGTATGGATTATGAATCCTCTTTCGGCAAAGCACGCCCAAATGATACTATCTTGAAGCTTCAAAGGACAACACCATATTACAAAAGAAACCGTGCACATGTTTGCAGTTTCTACATAAGGGGTGAGTGTACTAGAGGAGCTGAGTGCCCCTATAGGCACGAGATGCCAGTAACTGGGGAGTTGTCTCAACAAAATATCAAAGATCGTTATTATGGGGTGAATGATCCAGTGGCATTAAAGCTACTTGGCAAGGCAGGAGAGATGCCCTCTCTGGAGGCTCCTGAAGATGAGAGCATTAAAACTCTTTATGTTGGTGGACTTGATGCAAGGGTCACTGAGCAGGATTTGCGGGATAACTTCTATGCCCATGGTGAAATTGAATCCATCAAAATGGTTCTTCAACGGGCTTGTGCTTTTGTGACCTATACAACCAGAGAAGCCGCCGAAAAGGCAGCAGAAGAACTCTCAAACAAACTGGTTATTAAGGGCCTAAGGCTAAAGCTGATGTGGGGTAGGCCTCAGTCGGCGAAACCTGAGTCGGATGACTCCAACCAAGCAAGGCAGCAGGCTTCTGTGGCTCATAGCGGGTTGTTGCCTAGAGCGATTATATCACAGCAGCAAAGCCAGGACCAGAACCAAGGAATGGTTTACTATAGCAATCCACCTCCTCAACCGCAAAGAAGCTATTACCCATCAATGGATCCTCAAAGAATGGGTGCTCTTATTCCTTCTCAAGAGGGTCCTCCTGGGGGACCTTCCGGGTCTGGGGAGAACAAACCCATTATGGAGAAGCAGCAAATGCAACATTATGCCCATCCAATGAGGCCTCCACCACCAGGCCAATATCAACATCAGTATTATCCTCCATATGGCTATATGCCCCCAGTTCCCCATTATCAACAACAGTACCCACCACCACCATATAATGCTCCGATGCCTCCATCCCACCCACCAGCTGTAAATCATCCTTATCAGCATTCCATGCAGCCAGGGTCTTCACAGGCAGGGTCTGCTCAGGGTGGCTCTGCACCTGCCGAAGCCGGAACATCGTCATCAGGGTCACAGCAGCAGTGA	1458	0.4767	MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTKAEYDKECKICTRPFTVFRWRPGRDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDSIPKSDVNREYFAEEHDRKTRAGMDYESSFGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMPSLEAPEDESIKTLYVGGLDARVTEQDLRDNFYAHGEIESIKMVLQRACAFVTYTTREAAEKAAEELSNKLVIKGLRLKLMWGRPQSAKPESDDSNQARQQASVAHSGLLPRAIISQQQSQDQNQGMVYYSNPPPQPQRSYYPSMDPQRMGALIPSQEGPPGGPSGSGENKPIMEKQQMQHYAHPMRPPPPGQYQHQYYPPYGYMPPVPHYQQQYPPPPYNAPMPPSHPPAVNHPYQHSMQPGSSQAGSAQGGSAPAEAGTSSSGSQQQ*	486

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan20g1040	485	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	230	288	IPR000504	GO:0003723
	Lan20g1040	485	PANTHER	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49-LIKE	1	464	-	-
	Lan20g1040	485	MobiDBLite	consensus disorder prediction	301	321	-	-
	Lan20g1040	485	Gene3D	-	149	209	-	-
	Lan20g1040	485	MobiDBLite	consensus disorder prediction	400	448	-	-
	Lan20g1040	485	Pfam	Torus domain	141	194	IPR032297	-
	Lan20g1040	485	SMART	rrm1_1	229	297	IPR000504	GO:0003723
	Lan20g1040	485	SMART	c3hfinal6	157	183	IPR000571	GO:0046872
	Lan20g1040	485	MobiDBLite	consensus disorder prediction	305	320	-	-
	Lan20g1040	485	MobiDBLite	consensus disorder prediction	334	485	-	-
	Lan20g1040	485	Gene3D	-	213	311	IPR012677	-
	Lan20g1040	485	ProSiteProfiles	Zinc finger C3H1-type profile.	157	184	IPR000571	GO:0046872
	Lan20g1040	485	MobiDBLite	consensus disorder prediction	453	485	-	-
	Lan20g1040	485	MobiDBLite	consensus disorder prediction	334	351	-	-
	Lan20g1040	485	CDD	RRM_RBM22	227	300	-	-
	Lan20g1040	485	SUPERFAMILY	CCCH zinc finger	159	182	IPR036855	GO:0046872
	Lan20g1040	485	SUPERFAMILY	RNA-binding domain, RBD	221	309	IPR035979	GO:0003676
	Lan20g1040	485	PANTHER	PRE-MRNA-SPLICING FACTOR RBM22	1	464	IPR039171	GO:0003723
	Lan20g1040	485	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	228	301	IPR000504	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan20g1040	Lan-Chr20	11365682	11370790	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan20g1040	220	289	Eukaryotic Initiation Factors Gene Family	AT1G49760	33.333	4.29e-06	47.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan20g1040	K12872		-	gmx:100778975	775.393