Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1035 ATGGAAGAAACAACAGCAGCCATCATGGATGCACTCTCCACTCTCACACCTTCTCATCTCTCAAATCTGACAAACACCATCTTCTCAGCCACCCACCACCACCATCGCCGCCTCTCGTTCCTCCTCTCTTCCCCAACCCTTTTCTCTTTAACCCTTCATCATCTCAACACACTCTCCCTCCCCCAAAAGACCCTCCTCATTGCCCGCCACCTCCTCTCATCTCTCCACCACCTCACCCAACATCTCACACCATCGCCACCGCCGCCTTTGTCAGCCGCAATCAGGCAGCGTGGGCTTGATGCTGTGTTACTACTACTCTTGTTCTGTGACACAAACAGACACAACCCAGAAGCTTTGGATGCACCCTATTCAGAATGGAGGGTGAACATGTGCAAGTACTACTCTCATACTTTGTTGAAACTTTCTTGTTCTTCAGTCACACCCATTGCAGCATGTGTAGGGACAATATTGATCCCTTATATTGAGATGGTGGCCCGGTGCTGGAGGACGGTGGAAGCATTGGGTTGTGGTGGTGGAGGGAAGGAGGTGGCGGCGGCAGCGTCTACGGTGGTTTCTCTGCCGGCAGTGGAGGTGGTGGTGGGTGGGAAAGAGTGTGTGATATGCAAAGAAGAGATGAGAGTAGGAAGAGATGTGTGCGAATTGCCATGTCAGCACTTGTTTCATTGGATGTGCATATTGCCTTGGCTGAGGAAGAGGAACACGTGCCCTTGCTGCAGGTTCAGGCTACCGTCTGATGATGTCTTCGGAGAGATCCAACGGTTGTGGGAAGTCTTGGTTAAAATGGGTTCAAAAGAATACGTAGGAATGTAG 831 0.5114 MEETTAAIMDALSTLTPSHLSNLTNTIFSATHHHHRRLSFLLSSPTLFSLTLHHLNTLSLPQKTLLIARHLLSSLHHLTQHLTPSPPPPLSAAIRQRGLDAVLLLLLFCDTNRHNPEALDAPYSEWRVNMCKYYSHTLLKLSCSSVTPIAACVGTILIPYIEMVARCWRTVEALGCGGGGKEVAAAASTVVSLPAVEVVVGGKECVICKEEMRVGRDVCELPCQHLFHWMCILPWLRKRNTCPCCRFRLPSDDVFGEIQRLWEVLVKMGSKEYVGM* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1035 276 Pfam Ring finger domain 203 246 IPR001841 -
Lan20g1035 276 ProSiteProfiles Zinc finger RING-type profile. 205 246 IPR001841 -
Lan20g1035 276 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC 2 271 - -
Lan20g1035 276 SUPERFAMILY RING/U-box 200 251 - -
Lan20g1035 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 257 IPR013083 -
Lan20g1035 276 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 271 - -
Lan20g1035 276 SMART ring_2 205 245 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1035 Lan-Chr20 11220399 11221295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1035 2 267 C3H Transcription Factor Family AT5G02750 48.929 3.01e-78 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1035 - - pvu:PHAVU_007G161400g 320.472