Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1027 ATGGCAAGGATTAAGGTTTACGAGTTGAGGAGCAAGACGAAAGCGGAGCTTCTGAACCAGCTGAAGGATCTGAAGGCGGAGCTCGCTCTTCTCCGTGTCGCCAAAGTCACCGGCGGTGCCCCTAACAAACTCTCCAAGATAAAAGTTGTGAGGTTGAACATAGCACAAGTGTTAACAGTTATTTCACAGAAGCAGAAAGCAGCACTTAGAGAGGCTTATAAGAATAAGAAGTATTTGCCTCTTGATCTTCGTCCCAAGAAAACCCGTGCTATTCGAAGACGCCTTACCAAACACCAGGCGTCATTGAAGACAGAAAGGGAGAAGAAGAGGGAGCTGTACTTTCCAATAAGGAAGTATGCAATCAAAGTTTAG 372 0.457 MARIKVYELRSKTKAELLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLNIAQVLTVISQKQKAALREAYKNKKYLPLDLRPKKTRAIRRRLTKHQASLKTEREKKRELYFPIRKYAIKV* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1027 123 Hamap 50S ribosomal protein L29 [rpmC]. 4 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Lan20g1027 123 Gene3D - 1 77 IPR036049 GO:0003735|GO:0005840|GO:0006412
Lan20g1027 123 PANTHER 60S RIBOSOMAL PROTEIN L35-LIKE 1 123 - -
Lan20g1027 123 PANTHER 60S RIBOSOMAL PROTEIN L35 1 123 IPR045059 GO:0000463|GO:0022625
Lan20g1027 123 Gene3D - 78 123 - -
Lan20g1027 123 TIGRFAM L29: ribosomal protein uL29 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Lan20g1027 123 CDD Ribosomal_L29_HIP 8 64 - -
Lan20g1027 123 Coils Coil 7 34 - -
Lan20g1027 123 Pfam Ribosomal L29 protein 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Lan20g1027 123 SUPERFAMILY Ribosomal protein L29 (L29p) 4 65 IPR036049 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1027 Lan-Chr20 11073079 11074905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1027 1 123 Cytoplasmic Ribosomal Protein Gene Family AT3G09500 88.618 3.45e-73 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1027 K02918 - gmx:100801539 228.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0598 8 8223064 8224706 Lan20g1027 20 11073079 11074905 LSH
Lan20g1027 20 11073079 11074905 Lan4g1597 4 24973487 24977816 LSH