Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1024 ATGGGAGAAGAAGTGGTTTGTAAGCAAGCATTAGAAAATGGAAAGAATGAAAACAACAAGGAGGAATCACGAATGGAACTGAAGCGTGATTACAACCAATGCATTGCTGATACAATTGATAATAATACTGAGCCTGACCAATCTCCGAATAAGAAACAAGTTAAAGAGGCTTCCAACGACGAAGTTTGCTCCGAGGTTACGAACCCTAACACTTCTGCAGCAGAGAATGGGTTAACCACCTTTCATGATATCAGTAGCCAACCAAGTGAGTCGGCGAATATTGTTGAGTGTGGGGAATTGACTTCTACTTGCTTGGAGAACTCAAGTACTTCTGATGAGACATTGAGTACGGATGATCCGAAAAAGAACAAAAACAGTAATACATCTCAGAATGATAATAAGGACACAAGCAGCGCCGCAGCGATGTCGTGTGTTGTGATGGAAATACCTAAGCATGCTAGTTCTTCTGGGGTTAGGAAGATTACTTTTAAGTTCAGTAAGAAGAAAGAGGACTATGATGAAGAATATTTGGCTAAGGCTGATATGGATCATAATAGTGAGTTGTATGAAAGCTCATGTGGAATGGGACATGTTGGAACCGGAGATATGGACTTTTATGCTGCTCGCAATATGGAATTGAAAATGTCGAAGAAGGTTGTCCCCAACTACTACCCTACGAATGTTAAAAAACTGTTATCAACTGGTATCCTTGATGGAGCTATAGTTAAATATATGTACAACCCCATGAAGGTTGAGCTACGTGGGATTATTGGTGGTGGTGGATACTTGTGTAGCTGTTCGCTGTGCAATTACTCCAGAGTGCTTAGTGCATATGAGTTTGAGCAGCATGCTGGTGCCAAGACTAGACATCCTAACAATCATATATACCTAGAGAATGGAAAGCCAATATACAGCATTATACAGGAAATAAAAATTGCTCCACTCAACATATTAGATGAGGTTATAAAGAGTGTAGCTGGTTCATCTGTCAATGAGGAGTGCTTCCAGGCTTGGAAAGAAAGCCTTCTACAAAGCGACGGGAGGGTTAAAACTTATAAAGAGAATAGCACAAATCATACTGGAATGCCTCATAAACGCATAAGTCAATCTGTAGAAAGTGTGTGCCATTTGTCTTCTTTGCATGTTCCAAGTCATTTTGAGCAGCAAATGTATGTGCAGCAGACTGCTGATGGGTGGAAACATGCAGTGAAGAAAAGCTCCGGCCCAGGCGTACTGAAGAGAAATGTGGATGGCTGCACTAAGAGAAGGGACAATGATTTACACAAGTTACTTTTTATGCCAAATGGACTCCCAGATGGTGCTGATTTGGCTTATTATGTCAAGGGACAGAAATTACTTGGAGGTTACAAACAGGGGAATGGTATAGTCTGTGGTTGTTGTGACTTAGAGATAAGCCCTTCACAGTTTGAAGCCCATGCTGGAATGGCTGCTAGACGTCAACCTTACCGACATATATATACTTCCAATGGATTAACACTCCATGATATAGCTCTCTCCTTGGCAAGTGGTCAAAATCTTACCACAGGAGATAGTGATGATATGTGTGCAATATGTGGAGATGGAGGGGATCTGATTCTTTGCAATGGATGTCCTAGGGCTTTTCATGCAGCCTGCTTGGGTTTTGATTGTGCTCCAGAAAGTAGTTGGCATTGTCTAAACTGTAGAGATAATGTTGGTAATGGAAGAGAATCTTCTATGGCGAGGCCAATCATGATACGGTTGACACAAGTCGATAAAGCTCCAGAGTTTGAAATGGGGGGATGTATTGTTTGCAGGCAACATGATTTCAGTGTTGCTAAATTTGATGAGCGGACAGTAATAATTTGTGACCAGTGTGAGAAGGAGTATCATGTTGGTTGCTTGCGGGACATAGGACTATGTGAGTTGGAAGAGCTGCCAAAGGATAAATGGTTTTGTTGTGATGACTGCAATCGAATATATGTGGCTCTTCAGAATTCAGTTTCTGCTGGGGCAGACATTATACCAACTTCCTTGTCAGAACTAATAATCAAGAAGCATGAGGAGAGGGGATTATGTTCCTATGAAGGCATGAATGGCATCCAGTGGAGAATTTTAAGTGGGAAGAGTCGTTATCCAGAGCATTTACCTTTACTTTCACGTGCTGCTGCAATTTTTCGAGAGTGTTTTGATCCCATTGTTGCACTATCTGGTCGTGACTTGATTCCTGTTATGGTCTATGGGAGAAATATTTCTGGCCAAGAATTTGGAGGGATGTATTGCATTGTTTTAATTGTGAATTCTGTTGTTGTATCTGCTGGTCTGCTTAGGATTTTTGGCTGTAATGTTGCCGAGCTTCCACTGGTAGCTACAAGTAGAGAATATCAAGGAAAAGGTTATTTTCAAGTGCTATTCTCTTGTATAGAGAGGTTGCTGTCTTCTCTCAATGTAGAAAAGCTGGTACTTCCTGCAGCAGGGGATGCTGAGTCAATTTGGACGAAGAAATTAGGCTTTCGAAAGATGAGTGAAGATCAGTTATCCAAACATCTCAGGGAGGTGCAGCTCACCCTCTTCAATAAAACTTCAATGCTTGAGAAGACAGTGCAGCGGGCAATAGAGTGA 2601 0.4156 MGEEVVCKQALENGKNENNKEESRMELKRDYNQCIADTIDNNTEPDQSPNKKQVKEASNDEVCSEVTNPNTSAAENGLTTFHDISSQPSESANIVECGELTSTCLENSSTSDETLSTDDPKKNKNSNTSQNDNKDTSSAAAMSCVVMEIPKHASSSGVRKITFKFSKKKEDYDEEYLAKADMDHNSELYESSCGMGHVGTGDMDFYAARNMELKMSKKVVPNYYPTNVKKLLSTGILDGAIVKYMYNPMKVELRGIIGGGGYLCSCSLCNYSRVLSAYEFEQHAGAKTRHPNNHIYLENGKPIYSIIQEIKIAPLNILDEVIKSVAGSSVNEECFQAWKESLLQSDGRVKTYKENSTNHTGMPHKRISQSVESVCHLSSLHVPSHFEQQMYVQQTADGWKHAVKKSSGPGVLKRNVDGCTKRRDNDLHKLLFMPNGLPDGADLAYYVKGQKLLGGYKQGNGIVCGCCDLEISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLASGQNLTTGDSDDMCAICGDGGDLILCNGCPRAFHAACLGFDCAPESSWHCLNCRDNVGNGRESSMARPIMIRLTQVDKAPEFEMGGCIVCRQHDFSVAKFDERTVIICDQCEKEYHVGCLRDIGLCELEELPKDKWFCCDDCNRIYVALQNSVSAGADIIPTSLSELIIKKHEERGLCSYEGMNGIQWRILSGKSRYPEHLPLLSRAAAIFRECFDPIVALSGRDLIPVMVYGRNISGQEFGGMYCIVLIVNSVVVSAGLLRIFGCNVAELPLVATSREYQGKGYFQVLFSCIERLLSSLNVEKLVLPAAGDAESIWTKKLGFRKMSEDQLSKHLREVQLTLFNKTSMLEKTVQRAIE* 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1024 866 Pfam Tify domain binding domain 455 504 IPR032308 -
Lan20g1024 866 Pfam Tify domain binding domain 255 309 IPR032308 -
Lan20g1024 866 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 750 836 IPR016181 -
Lan20g1024 866 MobiDBLite consensus disorder prediction 60 76 - -
Lan20g1024 866 Gene3D - 742 849 - -
Lan20g1024 866 CDD PHD1_AIRE 521 561 - -
Lan20g1024 866 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 510 587 IPR013083 -
Lan20g1024 866 SUPERFAMILY FYVE/PHD zinc finger 517 566 IPR011011 -
Lan20g1024 866 MobiDBLite consensus disorder prediction 106 138 - -
Lan20g1024 866 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 26 862 - -
Lan20g1024 866 ProSitePatterns Zinc finger PHD-type signature. 595 650 IPR019786 -
Lan20g1024 866 MobiDBLite consensus disorder prediction 121 138 - -
Lan20g1024 866 SMART PHD_3 594 651 IPR001965 -
Lan20g1024 866 SMART PHD_3 521 562 IPR001965 -
Lan20g1024 866 ProSitePatterns Zinc finger PHD-type signature. 522 561 IPR019786 -
Lan20g1024 866 SUPERFAMILY FYVE/PHD zinc finger 593 648 IPR011011 -
Lan20g1024 866 ProSiteProfiles Zinc finger PHD-type profile. 519 564 IPR019787 -
Lan20g1024 866 PANTHER AUTOIMMUNE REGULATOR 26 862 - -
Lan20g1024 866 CDD NAT_SF 754 815 - -
Lan20g1024 866 MobiDBLite consensus disorder prediction 14 33 - -
Lan20g1024 866 MobiDBLite consensus disorder prediction 1 76 - -
Lan20g1024 866 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 591 653 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1024 Lan-Chr20 11037999 11049989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1024 1 861 PHD Transcription Factor Family AT3G53680 54.020 0.0 898
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1024 - - gmx:100808999 1390.17