Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1020 ATGGCAGCGGCACGGCGTCTCCGTGACCTGCAATCCCACTCCGGCAACAAGATCTGCGTCGACTGTTCCCAAAAGAATCCCCAATGGGCCTCCGTCTCCTACGGCGTTTTCATGTGTCTCGAGTGCTCCGGCAAGCACCGCGGCCTCGGCGTCCACATCTCCTTCGTCCGATCCGTCACTATGGACTCTTGGTCCGAAATCCAGATCAAGAAAATGGAAGCTGGTGGCAACGACAAACTCAACTCGTTCCTCTCTCGTTATGAAATCCCTAAGGAAACTGATATTGTTACCAAGTATAATACTAACGCTGCTTCTGTTTATAGGGATCGGATTCAAGCCATTGCTGAAGGCCGCGCGTGGCGCGATCCACCTGTTGTTAAGGAGAATCTCAAGGGAAAGCAGAGTGGTGGTGGTGGCGGTGGTGGAGGAAGTGGTAGGAGTAATGGAGGGTGGGATGATGATTGGGGTAATGATGATGGTTTTGGGAATTCTGGTGAAATTAGGCGGAATCATTCGACCGGGGATTTCAGGAGCGGTGGTGGTGGTGGTGGGGCGCCTGTGAGGTCGAGGTCTACCACCGGCTTTGCGCGATCGGAATTGGAGGCTTCGGCTGCGAACAAGGAGACTTTTTTCGCGAGGAAGATGGCTGAGAATGAATCAAGGCCTGAGGGTCTTCCTCCATCTAAGGGTGGAAAGTATGTTGGGTTTGGATCGAGTCCTGTGCCTTCTGCACAGAGGAGTAATCCACAAAGTGATTATTTTTCTGTTGTTTCTCAGGGGATTGGTAAATTATCGCTGGTTGCTGCCTCTGCGGCTCAAGAGATTACTTCTAAGGTCAAGGAAGGTGGTTATGACGGGAAGGTCAATGAAACTGTCACTGTTGTCTCTCAGAAGACAACAGAGATTGGACAAAAAACATGGGGTATAATGAAAGGGGTCTTGGCTATGGCTTCACAGAAGGTTGAGGAGTTGGCTGGAGAAGGTCCAAATTCGAAGACTGATAACTGGCAGGGAAATGAGAATGGTAGAAATGGTTACTATCAGGATTTCAATCAAGAGAACAAAGGTGGGAACTCTTCAATGGGAAGAGAACAATCTTCATCTGGGCAATTTAAAACTCATAGCTCAAGTTCTTGGGACGACTGGGGCAACAAGGATAGTAGGAAGGAAGAACCAGCTAAGGGATCAAATCATTCTTACAACTCAAGCTCTTGGGATGATTGGGACCGCAAAGATTCTAGTAAGGAAGGACCAGCTAAAGGGTCGGCTCCCCATAACAATGATGGTTGGGCTGGCTGGGATGATGCCAAAGATGATGGGTTTGATAATTTTCATGAAGGTGCATCTAATACGAAAGGTGCTGGTCATAAGGCAAAATCAGATTCCACCTGGACAGGGGGTGGCTTTAACTAA 1413 0.489 MAAARRLRDLQSHSGNKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNDKLNSFLSRYEIPKETDIVTKYNTNAASVYRDRIQAIAEGRAWRDPPVVKENLKGKQSGGGGGGGGSGRSNGGWDDDWGNDDGFGNSGEIRRNHSTGDFRSGGGGGGAPVRSRSTTGFARSELEASAANKETFFARKMAENESRPEGLPPSKGGKYVGFGSSPVPSAQRSNPQSDYFSVVSQGIGKLSLVAASAAQEITSKVKEGGYDGKVNETVTVVSQKTTEIGQKTWGIMKGVLAMASQKVEELAGEGPNSKTDNWQGNENGRNGYYQDFNQENKGGNSSMGREQSSSGQFKTHSSSSWDDWGNKDSRKEEPAKGSNHSYNSSSWDDWDRKDSSKEGPAKGSAPHNNDGWAGWDDAKDDGFDNFHEGASNTKGAGHKAKSDSTWTGGGFN* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1020 470 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Lan20g1020 470 CDD ArfGap_ArfGap1 3 117 - -
Lan20g1020 470 MobiDBLite consensus disorder prediction 431 445 - -
Lan20g1020 470 MobiDBLite consensus disorder prediction 324 470 - -
Lan20g1020 470 MobiDBLite consensus disorder prediction 455 470 - -
Lan20g1020 470 Gene3D Arf GTPase activating protein 1 131 IPR038508 -
Lan20g1020 470 SUPERFAMILY ArfGap/RecO-like zinc finger 5 113 IPR037278 -
Lan20g1020 470 MobiDBLite consensus disorder prediction 330 378 - -
Lan20g1020 470 MobiDBLite consensus disorder prediction 216 250 - -
Lan20g1020 470 SMART arf_gap_3 4 120 IPR001164 GO:0005096
Lan20g1020 470 MobiDBLite consensus disorder prediction 124 200 - -
Lan20g1020 470 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 396 469 - -
Lan20g1020 470 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 397 - -
Lan20g1020 470 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 397 IPR044519 GO:0005096|GO:0016192
Lan20g1020 470 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 396 469 IPR044519 GO:0005096|GO:0016192
Lan20g1020 470 MobiDBLite consensus disorder prediction 379 395 - -
Lan20g1020 470 MobiDBLite consensus disorder prediction 404 418 - -
Lan20g1020 470 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Lan20g1020 470 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Lan20g1020 470 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Lan20g1020 470 Pfam Putative GTPase activating protein for Arf 5 105 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1020 Lan-Chr20 10945986 10951227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1020 5 91 C2H2 Transcription Factor Family AT4G21160 50.000 3.22e-22 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1020 K12492 - gmx:100806519 691.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1377 11 21148937 21153971 Lan20g1020 20 10945986 10951227 LSH
Lan19g0477 19 6924325 6928636 Lan20g1020 20 10945986 10951227 PCT
Lan20g1020 20 10945986 10951227 Lan19g0477 19 6924325 6928636 PCT