Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1007 ATGGAAGCTCGCTCTGCTTTTTCTGTTGAAAGAACAAGTGTGAAACAGCTCAGTAACATGGGAATGTCTGGACCACTTTCTTCATCGTGCCCAGTCCTTCCACTTCCAGCACCCGTAGAAGCGACATATCCCAAGTTGCCTGATTCACAACTGGCTTTGGTTGAAAAGGAGCTTATTACAAGACCTTTTACTCATTCAAATTCCCATGGAGTAGTTGGGCATACTTTTTCATCTTCTCCTGGATATTCGACCGATCTTCATCACTCATCCCTTTCACCTCATGAAAAGCATTCTACAAATGCTCATTTCATTTCACAATCAACTACTAGCGTAGCTCCATTACCATTATCATATTTCAAAGAAAATAGTGCTTCCTGCCATACAGATTCCATACCCAGCTTTCTGGATTTTTCTGCAAATACCTCCACTGGTCATAGTCAGGTAGAAAGCGATGTCTGCAATATCATGGCATCTGACGAGTATTGTCAGCGAAAAGATTGGCAGGAGTGGGCTGACCAGCTAATCAATGACGATGATTCTTTGACTTCTAACTGGAACGACCTTTTTGCTGACAACATCCAAGAGCCAAAGATTTCATTTCAGGTTTCAAAGCCATCTTCACAATTTCCAGGACATCAAGCCCATGGCCACCAACACCTTCCTGCATCATCAGGAGAAAATTGCAATGGTGCTGCCCCCCTTTCCTCAGCAAATTCTGCTTCTGCCAAGCCACGTATGCGTTGGACACCAGAACTTCATGAGGCCTTTGTGGAGGCTGTCAACCAACTTGGTGGGAGTGAAAGAGCTACTCCTAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGGTTAACTATTTATCATGTTAAAAGCCACTTGCAGAAATACAGGACCGCTCGATATAGACCGGAGTCATCTGAAGGAGTCACAGAGAAAAAAACAAGTTCCATTGAAGATATTTCATCTCTGGATTTGAAAACTGGTATTGGGATCACTGAAGCTCTACAACTGCAAATGGAGGTTCAGAAGCGGTTACATGAGCAACTTGAGATTCAAAGAAATCTACAGTTGCGAATAGAAGAACAAGGAAGGTACCTCCAGATGATGTTTGAGAAGCAATGTAAACCCGGTATCGAGACGTTTAAGGCATCGCCATCTATCATTGACAACCCATCTGGAGTCAAAAGTGACTTGGAAGCATCACAAGTGGACGGTTGCAGGTCAGGACCCAATCAAGCTGATGGTAGTATCGCAGTTGATGAAGGCTCACCGGAAATGGGTGCAAAGCATGATTCTCCCAAGCAACATGTTGTCGGTGATGATGTTAGTCCTCAACCCTCAAAGCGTAAACGAACAAACGAGTAG 1362 0.4405 MEARSAFSVERTSVKQLSNMGMSGPLSSSCPVLPLPAPVEATYPKLPDSQLALVEKELITRPFTHSNSHGVVGHTFSSSPGYSTDLHHSSLSPHEKHSTNAHFISQSTTSVAPLPLSYFKENSASCHTDSIPSFLDFSANTSTGHSQVESDVCNIMASDEYCQRKDWQEWADQLINDDDSLTSNWNDLFADNIQEPKISFQVSKPSSQFPGHQAHGHQHLPASSGENCNGAAPLSSANSASAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGVTEKKTSSIEDISSLDLKTGIGITEALQLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKPGIETFKASPSIIDNPSGVKSDLEASQVDGCRSGPNQADGSIAVDEGSPEMGAKHDSPKQHVVGDDVSPQPSKRKRTNE* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1007 453 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 240 300 IPR017930 -
Lan20g1007 453 PANTHER PROTEIN PHR1-LIKE 1-LIKE ISOFORM X1 28 453 - -
Lan20g1007 453 Coils Coil 331 351 - -
Lan20g1007 453 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 243 297 IPR006447 GO:0003677
Lan20g1007 453 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 28 453 IPR044848 GO:0003700
Lan20g1007 453 MobiDBLite consensus disorder prediction 203 242 - -
Lan20g1007 453 Gene3D - 242 301 - -
Lan20g1007 453 MobiDBLite consensus disorder prediction 220 242 - -
Lan20g1007 453 SUPERFAMILY Homeodomain-like 241 297 IPR009057 -
Lan20g1007 453 Pfam MYB-CC type transfactor, LHEQLE motif 330 374 IPR025756 -
Lan20g1007 453 MobiDBLite consensus disorder prediction 423 453 - -
Lan20g1007 453 Pfam Myb-like DNA-binding domain 245 296 IPR001005 -
Lan20g1007 453 MobiDBLite consensus disorder prediction 383 453 - -
Lan20g1007 453 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1007 Lan-Chr20 10816458 10824041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan20g1007 1 372 G2-like Transcription Factor Family AT4G28610 50.131 1.05e-100 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lan20g1007 Myb_DNA-binding 8.3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1007 - - gmx:100793593 613.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g0263 8 4648250 4651566 Lan20g1007 20 10816458 10824041 LSH
Lan4g0477 4 7173325 7176714 Lan20g1007 20 10816458 10824041 PCT